Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 111 4e-19 >seq18 Length=480229 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||| ||||| || || || || |||||||| || ||| ||| Sbjct 341866 CAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCCGAC 341925 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| || || ||| || Sbjct 341926 ACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAACAG 341985 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || |||||| |||| || ||||||||| | | ||||||||| | Sbjct 341986 CGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAACATT 342045 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||||||| || || || Sbjct 342046 CAGAAAGAGTCTACTCTCCATCTCGT 342071 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||| | || ||||| ||||| || |||| || ||| Sbjct 341431 ACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCTGATACCATCGACAACGTCAAGAGC 341490 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || ||| ||| ||| ||| | |||||||||||||| ||| Sbjct 341491 AAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAACAACGTCTTATCTTCGCCGGGAAG 341550 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || |||||| | || | | || || ||| ||||||| || || || ||||| Sbjct 341551 CAATTAGAGGATGGACGAACCCTCTCAGACTATAACATCCAGAAGGAATCCACCCTTCAT 341610 Query 206374 CTTGTTTTGAGACTTCG 206390 || ||| | |||| || Sbjct 341611 CTGGTTCTCCGACTACG 341627 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || |||| || ||| |||||| || | || Sbjct 341650 AAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCTGATACCATTGACAAC 341709 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| ||||| || ||| || ||| || || | ||||| Sbjct 341710 GTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAACAGCGATTGATCTTT 341769 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | ||||||||| | || | | ||||||||| | ||||| ||||| Sbjct 341770 GCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAACATTCAGAAGGAGTCG 341829 Query 206365 ACTCTTCACCTTGTT 206379 || || || || ||| Sbjct 341830 ACCCTGCATCTGGTT 341844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819755196549