Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq18 111 4e-19
>seq18
Length=480229
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| ||||| ||||| || || || || |||||||| || ||| |||
Sbjct 341866 CAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCCGAC 341925
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| ||||| || ||||| || || ||| ||
Sbjct 341926 ACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAACAG 341985
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | || || || || |||||| |||| || ||||||||| | | ||||||||| |
Sbjct 341986 CGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAACATT 342045
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||||||||| || || ||
Sbjct 342046 CAGAAAGAGTCTACTCTCCATCTCGT 342071
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| || |||||| | || ||||| ||||| || |||| || |||
Sbjct 341431 ACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCTGATACCATCGACAACGTCAAGAGC 341490
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || || ||| ||| ||| ||| | |||||||||||||| |||
Sbjct 341491 AAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAACAACGTCTTATCTTCGCCGGGAAG 341550
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| || || |||||| | || | | || || ||| ||||||| || || || |||||
Sbjct 341551 CAATTAGAGGATGGACGAACCCTCTCAGACTATAACATCCAGAAGGAATCCACCCTTCAT 341610
Query 206374 CTTGTTTTGAGACTTCG 206390
|| ||| | |||| ||
Sbjct 341611 CTGGTTCTCCGACTACG 341627
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || || || |||| || ||| |||||| || | ||
Sbjct 341650 AAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCTGATACCATTGACAAC 341709
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| ||||| || ||| || ||| || || | |||||
Sbjct 341710 GTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAACAGCGATTGATCTTT 341769
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| ||||||||| | ||||||||| | || | | ||||||||| | ||||| |||||
Sbjct 341770 GCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAACATTCAGAAGGAGTCG 341829
Query 206365 ACTCTTCACCTTGTT 206379
|| || || || |||
Sbjct 341830 ACCCTGCATCTGGTT 341844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181819755196549
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |