Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq5 109 8e-19 >seq2 Length=2148610 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 |||||| || ||||| |||||| || |||||||| || | ||||| ||||| || Sbjct 698758 TAAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGT 698699 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 | || ||||| ||||| ||||| ||||||||||| |||| ||||||||| ||||| || Sbjct 698698 CAAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAA 698639 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 |||||| || ||||| || ||||| || || Sbjct 698638 GAAGATACCCTCTACAGCAGCAAACGCCAC 698609 >seq5 Length=1549313 Score = 109 bits (120), Expect = 8e-19 Identities = 207/305 (68%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| || ||||| || |||| || ||| || |||| ||||| | | | | Sbjct 643766 TCGAACTCCTCTCCATGCACTTCATGCATTCCGGGCGCTTCAGCGGGACAGAAAAGAGGC 643707 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || || | | | || |||||| ||| || | || |||||||||||||| | || Sbjct 643706 CAGTCACCGTTCTGCTCGACTCGTCGCATGAACATGTCTGGAATCCAAAGAGCAAAGAAA 643647 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 || ||||| | ||| |||||| ||||| ||| || ||||| || || || | Sbjct 643646 AGGTCTCTAGCTCTGACTTCTTCTTTTCCGTGATTCTTGCGGAGATCAAGGAAGTCAAAG 643587 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 ||||| | ||||||||| || | || || || | | | || ||||| || || || ||| Sbjct 643586 ATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCC 643527 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||| | || | ||||| || || | |||| ||||||||| | |||||||| || Sbjct 643526 TGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCGGTACGATACCATTGGAG 643467 Query 69817 TTACC 69821 | ||| Sbjct 643466 TAACC 643462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908207541160