Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq16 84.2 3e-11 seq2 82.4 1e-10 >seq5 Length=1549313 Score = 143 bits (158), Expect = 3e-29 Identities = 425/646 (66%), Gaps = 22/646 (3%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 ||||| || | |||||||| |||||||| || || || | |||||| | ||| ||| Sbjct 644593 TAGATATTCGACGTGTATGGCTCAAAGCACTCGTTGAAGCCGAGGATTTGCGAGGTAGAG 644534 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || |||||||| || || | | ||| ||| || | ||| | || |||||| | ||| Sbjct 644533 GCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTGCGGATACCATGCTGCTTGATCTGGTCC 644474 Query 110828 TTGAGAACATCCCAGTCGTAGT-TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAG 110886 ||||| | ||||||| || | | || | || | |||| | ||| ||||||| Sbjct 644473 TTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGAGTGAC-TCCCCATAAATCATACTGAAG 644415 Query 110887 CACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAA 110946 | || | || || ||||| ||||| |||| || | ||| | ||| ||| | Sbjct 644414 TTCTCCCTTCGATGCAGGAGATCCCTCGTAGGTGGGGTAAGGACCCTCTTCTTGAGCTAG 644355 Query 110947 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 111006 || || ||||| || | ||||||||| || || || ||||| | || | || Sbjct 644354 CTCGCACGATGCCTCGAGTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTGAGTTC 644295 Query 111007 CTTGGCTT-CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065 ||| |||| ||| ||||| || | ||| || || || |||| |||||||||| Sbjct 644294 CTTAGCTTGCATA-GAATCGAAGGGGTAACGAAGAGCCATGAAAGCATCGGCGAGACCTT 644236 Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGC-GCAGTCTCAACGG 111122 | ||||| | ||| || |||| |||||| | ||| |||| || || ||| ||||| Sbjct 644235 GTACACCGATACCGATGGGTCGGTGTCGGAGATTGGACTTCTTTGCTTCAG---GAACGG 644179 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 |||| || || || || || ||| |||||| || |||| ||| | | || | Sbjct 644178 GATAGAAGTTGACATCGATAACCTTGTTCAGATTTCTGCAGACAACCTTGGCAACATCGT 644119 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGA 111239 |||| || | |||| | ||| ||| ||| | | |||| ||||||| Sbjct 644118 GAAGCTTCT-------GGAAGT--TATACTCGCCATTGGTGATAAAGGTTGGTAGGGCGA 644068 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || ||||| ||||| || || ||| || | | |||||| | ||| || || | Sbjct 644067 TGGAAGCCAAGTTGCAGACCGCGACCTCGTCGGGGGCGGAGTACTCGATAATCTCAGTGC 644008 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | |||||||| | || || || |||| ||||| ||||| ||||| Sbjct 644007 ACAAGTTGGAGCATTTGATGGTACCCAGGTTCTTCTGGTTGCTCTT 643962 >seq16 Length=487666 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9207 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 9266 || |||| ||| |||||||||||||||| ||||| |||||| || | ||| | Sbjct 197578 CCGCAAAGCGAAAAGACACCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATAC 197519 Query 9267 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 9326 || | ||| | ||||||||||||||||||||||| || || || | ||||| Sbjct 197518 GCCTACTGGATAGTCAAAAATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATT 197459 Query 9327 CTCTTCAACCATGAATCACCGAGACGAGG 9355 || ||||| || ||||| || ||| |||| Sbjct 197458 CTTTTCAATCACGAATCGCCAAGAAGAGG 197430 >seq2 Length=2148610 Score = 82.4 bits (90), Expect = 1e-10 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||| ||||||| || || || || || || || | || ||||||||||| Sbjct 698739 TGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCCGGCATGAGACCG 698680 Query 122731 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | |||| | || | ||| || || || ||||||||||||||||| ||| Sbjct 698679 CGCTTCTTGAGCCAAAAGATGGAAGCAAAA-GAGCCAGAGAAGAAGATACCCTCTACAGC 698621 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||||| | | |||||| | |||| Sbjct 698620 AGCAAACGCCACGATGCGTTCACCAAAGG 698592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031458322400