Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 3e-29
seq16 84.2 3e-11
seq2 82.4 1e-10
>seq5
Length=1549313
Score = 143 bits (158), Expect = 3e-29
Identities = 425/646 (66%), Gaps = 22/646 (3%)
Strand=Plus/Minus
Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767
||||| || | |||||||| |||||||| || || || | |||||| | ||| |||
Sbjct 644593 TAGATATTCGACGTGTATGGCTCAAAGCACTCGTTGAAGCCGAGGATTTGCGAGGTAGAG 644534
Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827
|| |||||||| || || | | ||| ||| || | ||| | || |||||| | |||
Sbjct 644533 GCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTGCGGATACCATGCTGCTTGATCTGGTCC 644474
Query 110828 TTGAGAACATCCCAGTCGTAGT-TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAG 110886
||||| | ||||||| || | | || | || | |||| | ||| |||||||
Sbjct 644473 TTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGAGTGAC-TCCCCATAAATCATACTGAAG 644415
Query 110887 CACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAA 110946
| || | || || ||||| ||||| |||| || | ||| | ||| ||| |
Sbjct 644414 TTCTCCCTTCGATGCAGGAGATCCCTCGTAGGTGGGGTAAGGACCCTCTTCTTGAGCTAG 644355
Query 110947 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 111006
|| || ||||| || | ||||||||| || || || ||||| | || | ||
Sbjct 644354 CTCGCACGATGCCTCGAGTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTGAGTTC 644295
Query 111007 CTTGGCTT-CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065
||| |||| ||| ||||| || | ||| || || || |||| ||||||||||
Sbjct 644294 CTTAGCTTGCATA-GAATCGAAGGGGTAACGAAGAGCCATGAAAGCATCGGCGAGACCTT 644236
Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGC-GCAGTCTCAACGG 111122
| ||||| | ||| || |||| |||||| | ||| |||| || || ||| |||||
Sbjct 644235 GTACACCGATACCGATGGGTCGGTGTCGGAGATTGGACTTCTTTGCTTCAG---GAACGG 644179
Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182
|||| || || || || || ||| |||||| || |||| ||| | | || |
Sbjct 644178 GATAGAAGTTGACATCGATAACCTTGTTCAGATTTCTGCAGACAACCTTGGCAACATCGT 644119
Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGA 111239
|||| || | |||| | ||| ||| ||| | | |||| |||||||
Sbjct 644118 GAAGCTTCT-------GGAAGT--TATACTCGCCATTGGTGATAAAGGTTGGTAGGGCGA 644068
Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299
| || ||||| ||||| || || ||| || | | |||||| | ||| || || |
Sbjct 644067 TGGAAGCCAAGTTGCAGACCGCGACCTCGTCGGGGGCGGAGTACTCGATAATCTCAGTGC 644008
Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345
| |||||||| | || || || |||| ||||| ||||| |||||
Sbjct 644007 ACAAGTTGGAGCATTTGATGGTACCCAGGTTCTTCTGGTTGCTCTT 643962
>seq16
Length=487666
Score = 84.2 bits (92), Expect = 3e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 9207 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 9266
|| |||| ||| |||||||||||||||| ||||| |||||| || | ||| |
Sbjct 197578 CCGCAAAGCGAAAAGACACCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATAC 197519
Query 9267 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 9326
|| | ||| | ||||||||||||||||||||||| || || || | |||||
Sbjct 197518 GCCTACTGGATAGTCAAAAATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATT 197459
Query 9327 CTCTTCAACCATGAATCACCGAGACGAGG 9355
|| ||||| || ||||| || ||| ||||
Sbjct 197458 CTTTTCAATCACGAATCGCCAAGAAGAGG 197430
>seq2
Length=2148610
Score = 82.4 bits (90), Expect = 1e-10
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
|| ||||| ||||||| || || || || || || || | || |||||||||||
Sbjct 698739 TGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCCGGCATGAGACCG 698680
Query 122731 CGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | |||| | || | ||| || || || ||||||||||||||||| |||
Sbjct 698679 CGCTTCTTGAGCCAAAAGATGGAAGCAAAA-GAGCCAGAGAAGAAGATACCCTCTACAGC 698621
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818
|||||||| | | |||||| | ||||
Sbjct 698620 AGCAAACGCCACGATGCGTTCACCAAAGG 698592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031458322400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |