Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 152 6e-32 seq2 96.9 4e-15 seq11 91.5 2e-13 seq3 82.4 9e-11 >seq5 Length=1549313 Score = 152 bits (168), Expect = 6e-32 Identities = 419/641 (65%), Gaps = 22/641 (3%) Strand=Plus/Minus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||||||| | ||||||||||||||||||||| ||| || | |||||| | || || Sbjct 644594 ATAGATATTCGACGTGTATGGCTCAAAGCACTCGTTGAAGCCGAGGATTTGCGAGGTAGA 644535 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 ||| || |||||||| || | ||| || ||| |||| ||| | | | | || | || Sbjct 644534 GGCAGTTGGCATGGGAGCGAGGAGGAGAGAGTTGCGGATACCATGCTGCTTGATCTGGTC 644475 Query 118301 CTTGAGAGCGTCCCAGT--CGTAGTT---GAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 |||||| | |||||| | |||| || || |||| ||| | |||| || Sbjct 644474 CTTGAGCGAAGCCCAGTCCCAGAGTTCGGAAGGAGTGACTCC-----CCATAAATCATAC 644420 Query 118356 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 || || || | || || || |||||||| | || || || ||||| | | Sbjct 644419 TGAAGTTCTCCCTTCGATGCAGGAGATCCCTCGTAGGTGGGGTAAGGACCCTCTTCTTGA 644360 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | ||| | |||||||| ||||||||||| || || || || || | || Sbjct 644359 GCTAGCTCGCACGATGCCTCGAGTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTG 644300 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | | |||| || | ||||| || | | || || || |||| |||||| Sbjct 644299 AGTTCCTTAGCTTGCATAGAATCGAAGGGGTAACGAAGAGCCATGAAAGCATCGGCGAGA 644240 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 ||||| ||||||| || || || || |||| | ||| |||||| || ||| Sbjct 644239 CCTTGTACACCGATACCGATGGGTCGGTGTCGGAGATTGGACTTCTTTGCTTCAGGAACG 644180 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 ||||| || || |||||||||| | || |||||| || ||||||||| | | || Sbjct 644179 GGATAGAAGTTGACATCGATAACCTTGTTCAGATTTCTGCAGACAACCTTGGCAACATCG 644120 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCG 118712 |||||||| | | | | | | ||| ||| ||| | | | || |||||| Sbjct 644119 TGAAGCTTCTGGAAGTTATA---------CTCGCCATTGGTGATAAAGGTTGGTAGGGCG 644069 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || |||| || || || | | ||| || | | |||||| ||||| || ||| Sbjct 644068 ATGGAAGCCAAGTTGCAGACCGCGACCTCGTCGGGGGCGGAGTACTCGATAATCTCAGTG 644009 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||||| || | || ||||| |||| |||||| || || Sbjct 644008 CACAAGTTGGAGCATTTGATGGTACCCAGGTTCTTCTGGTT 643968 >seq2 Length=2148610 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||| || || | |||||||| || || || || || || ||||||||||| Sbjct 698739 TGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGTCAAGCCCGGCATGAGACCG 698680 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | ||| || || | | ||| ||||||||||||||||| ||||| ||| Sbjct 698679 CGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAAGAAGATACCCTCTACAGCA 698620 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || ||||| | || || ||| |||||| Sbjct 698619 GCAAACGCCACGATGCGTTCACCAAAGG 698592 >seq11 Length=615894 Score = 91.5 bits (100), Expect = 2e-13 Identities = 272/409 (67%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 14057 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 14116 || || | ||| || ||||| || ||||| | ||| || |||| ||| | || || Sbjct 554134 ATATTCCTATCGAAACGACCAGGTCGGAGTAAGGCACTATCGAGGACATCGACTCGATTT 554075 Query 14117 GTCGCCGCGATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAG- 14173 || | |||| || |||| ||| | | |||| | | || ||||||||||| | |||| Sbjct 554074 GTACCAGCGAGAACTACGACTTGCTCCT-TCGT-ACCGAATCCATCCATCTC-GACAAGC 554018 Query 14174 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGC----ACTGCG 14229 || ||||||| ||| |||||| || ||||| || | || | | |||| || | Sbjct 554017 AGCTGATTGAGCGTTGATTCGCGCTCGTCATT-GCCGCCAAATGAACCGCCTTTACCTCT 553959 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGG 14288 | ||||| | || || || ||||| ||||||| |||| ||||| | | ||| | Sbjct 553958 TGATTTACCAATCGCATCGATCTCATCAATGAAAATGATAGATGGTGCGTTCTTCTTTGC 553899 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 || | | || | |||||| |||||| || |||||||| || |||||||| || || | Sbjct 553898 CATC-GCGAATAAATCTCGTACTCTCGAGGGTCCGACACCGACGAACATCTCAACGAATT 553840 Query 14349 TGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | || || |||||| ||| || || ||||| | ||| ||||| | Sbjct 553839 CTGAACCCGATACCGAGAAGAAGGGTACGCCAGCCTCTCCCGCTGTTGCTTTGGCGATCA 553780 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 14457 || || ||||| || || || | || || |||||| || ||||| Sbjct 553779 ATGTTTTACCCGTACCAGGAGGTCCGGAGATAATGGCACCGCGGGGGAT 553731 >seq3 Length=2053931 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 |||||||||||||| ||| || | || ||||| || || ||| ||| || ||| Sbjct 66080 GCATCTCGGACATTGAGTAGCTTTCCTCTTAGCGGGAAAACGCCATAGGTATCGCGGCCA 66139 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGC 180054 |||||||| ||||| | || || | || || ||||| ||||| || || | |||||| Sbjct 66140 ACCACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCTTCTGTGAGAATGAGC 66199 Query 180055 GTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTT 180104 || || | | | | | ||| || |||||||| || ||||||| ||| Sbjct 66200 GTGCAATGGCGTGCATCTTTCGTGCCAGCCTTGTTGGCATCGTCCAGCTT 66249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434666599640