Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 257 5e-63 seq18 165 2e-35 seq17 91.5 4e-13 >seq7 Length=1189413 Score = 257 bits (284), Expect = 5e-63 Identities = 678/1029 (66%), Gaps = 11/1029 (1%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || | |||||| || || || ||||| || | |||| Sbjct 283938 ACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGATGCCGGTACCATT 283879 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | | || || |||| || || || |||||||| || || || || || || Sbjct 283878 GCTGGTCTCCAGGTCCTCCGAATCATCAACGAGCCCACTGCCGCTGCCATCGCTTACGGT 283819 Query 349739 CTTGATAAAATGAGTGA---CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || | | | || | || || || | || ||||| ||| | ||||||||| Sbjct 283818 CTAGACAAGAAGGGCGAGTCCGGCGAGAAGAACGTCCTCATTTTCGATCTCGGTGGTGGT 283759 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||||||||| || || ||||| || || || ||| Sbjct 283758 ACATTCGATGTCTCCCTCCTGACCATTGAAGAGGGTATCTTCGAAGTCAAGGCTACCGCT 283699 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || ||||| ||||| |||||||| || || ||||||||| | |||| | || Sbjct 283698 GGTGACACCCATCTCGGTGGTGAAGATTTCGACAACCGTCTCGTTACCTTCTTTGCTCAA 283639 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 ||||| ||||| | || | ||||| | ||| | | || | | || ||| Sbjct 283638 GAATTCAAGCGAAAGAACAAGAAGGATATCTCCGGAAATGCCCGTGCTCTCAGACGTCTA 283579 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 ||||| || || || ||||| ||| | | |||| ||| || | || ||| | |||||| Sbjct 283578 AGAACAGCATGCGAGCGTGCGAAGAGAACTCTATCCTCTGCTGCACAGACCACCATTGAA 283519 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 ||||| || || || || | || |||| |||| || || |||||||| || || Sbjct 283518 ATTGACTCGCTCTTCGAGGGTATCGACTTCTACACATCCATCACCCGTGCTCGATTCGAG 283459 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 ||| | || ||||| || ||| | |||||||| || || || || || | || Sbjct 283458 GAACTGTGCCAAGATCTCTTCAGATCCACAATGGACCCAGTCGAGAAGGTTCTCCGTGAC 283399 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 | || || ||| | | | || | || | || |||||||| || ||||| Sbjct 283398 TCGAAGATTGACAAGTCTACTGTCAACGAGATTGTCCTCGTCGGTGGTTCCACTCGTATC 283339 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275 |||| | | ||| || | | || || | || || || || || || | | || || Sbjct 283338 CCAAGAATCCAAAAGCTCGTTTCCGACTACTTCAACGGAAAGGAGCCATGCAAGTCCATC 283279 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 || || ||||| || || ||||| || || ||||| || || | ||| | |||| | Sbjct 283278 AACCCCGATGAGGCCGTCGCATACGGCGCCGCTGTCCAAGCTGCCATTCTCACTGGTGAC 283219 Query 350336 AAGAGTTCTAAA--ATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGAT 350393 | | | ||| | | ||||| | || || ||||| |||| || || || || Sbjct 283218 A--CATCCGAAAAGACCCAAGATCTCCTCCTCCTCGATGTCGCTCCTCTATCCCTCGGTA 283161 Query 350394 TAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAA 350453 | || ||| | |||| || | ||| ||| || ||||| | || || ||||| | Sbjct 283160 TTGAGACTGCCGGTGGTGTTTTCACTCCTCTCATCAAGAGAAACACAACAGTTCCTACCA 283101 Query 350454 AAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTAT 350513 | ||||| ||| || || |||| || || || || || | ||| |||||||| | Sbjct 283100 AGAAGTCTGAAATCTTCTCCACATACGCCGACAACCAACCTGGTGTATTGATTCAAGTCT 283041 Query 350514 TTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT--ACCCTAAG 350571 | || |||||||||||| | || || || || || || || ||| || | | | | Sbjct 283040 TCGAGGGTGAACGTGCTAGAACAAAGGACAACAACCTCCTCGG-GAAGTTCGAACTTTCG 282982 Query 350572 TGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTC 350631 | || ||||| || ||||| |||||||| || || || | |||||| | ||| | Sbjct 282981 -GGTATCCCACCTGCACCAAGAGGTGTTCCTCAAATCGAGGTTACCTTCGATGTCGATGC 282923 Query 350632 AAATGGTAT 350640 || || || Sbjct 282922 CAACGGAAT 282914 Score = 152 bits (168), Expect = 2e-31 Identities = 414/631 (66%), Gaps = 6/631 (1%) Strand=Plus/Plus Query 183164 GGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTT 183223 |||||| || | || | |||| || || ||||| || | | | |||| || || Sbjct 283150 GGCAGTCTCAATACCGAGGGATAGAGGAGCGACATCGAGGAGGAGGAGATCTTGGGTCTT 283209 Query 183224 ATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTC 183283 || ||| | | || | | ||| |||||||| ||||| || || ||||| || || || Sbjct 283210 TTCGGATGTGTCACCAGTGAGAATGGCAGCTTGGACAGCGGCGCCGTATGCGACGGCCTC 283269 Query 183284 ATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTG 183343 ||| ||||| || || || || || || || || | || |||| | | ||| Sbjct 283270 ATCGGGGTTGATGGACTTGCATGGCTCCTTTCCGTTGAAGTAGTCGGAAACGAGCTTTTG 283329 Query 183344 AATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGATATTACTTTTACT 183403 ||| |||| || | ||| ||||||||||| | || | || | || | || || Sbjct 283330 GATTCTTGGGATACGAGTGGAACCACCGACGAGGACAATCTCGTTGACAGTAGACTTGTC 283389 Query 183404 AATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTAT 183463 ||| | || || | ||| || || || |||||||| || ||| || | |||| Sbjct 283390 AATCTTCGAGTCACGGAGAACCTTCTCGACTGGGTCCATTGTGGATCTGAAGAGATCTTG 283449 Query 183464 ACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAA 183523 || | || || |||| || | || | |||| | ||||| ||||| | | | Sbjct 283450 GCACAGTTCCTCGAATCGAGCACGGGTGATGGATGTGTAGAAGTCGATACCCTCGAAGAG 283509 Query 183524 GGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACA 183583 || ||||||||||| | || |||| || || |||| ||||| || || || || || Sbjct 283510 CGAGTCAATTTCAATGGTGGTCTGTGCAGCAGAGGATAGAGTTCTCTTCGCACGCTCGCA 283569 Query 183584 TGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCT 183643 |||||||||||| || | | | | | ||| | | ||||| | || | |||| Sbjct 283570 TGCTGTTCTTAGACGTCTGAGAGCACGGGCATTTCCGGAGATATCCTTCTTGTTCTTTCG 283629 Query 183644 TTTAAATTC---AGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAA 183700 || ||||| || || | || || || | | | || |||||||||||||| | Sbjct 283630 CTTGAATTCTTGAGCAA-AGAAGGT--AACGAGACGGTTGTCGAAATCTTCACCACCGAG 283686 Query 183701 ATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGA 183760 ||| || || ||||| ||||| || ||||| || || || |||||||| | | | || Sbjct 283687 ATGGGTGTCACCAGCGGTAGCCTTGACTTCGAAGATACCCTCTTCAATGGTCAGGAGGGA 283746 Query 183761 TACATCAAATGTACCACCACCCAAATCAAAA 183791 ||||| |||||||||||||| | ||| ||| Sbjct 283747 GACATCGAATGTACCACCACCGAGATCGAAA 283777 Score = 120 bits (132), Expect = 9e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 349209 TCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAA 349268 ||||| ||||||| || || ||||| || | ||| ||||||||||| ||||| || || | Sbjct 284415 TCGATCTAGGTACCACCTACTCTTGCGTCGGTGTCTGGCAAAATGACCGTGTCGAGATCA 284356 Query 349269 TTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGC 349328 | || || || || || ||||||||||| || ||||| || | || || || || |||| Sbjct 284355 TCGCCAACGACCAGGGAAACAGAACAACTCCTTCATATGTCGGCTTCACAGACACGGAGC 284296 Query 349329 GTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTG 349388 | | ||||||||| | || || || || | || || ||| | || || || || | Sbjct 284295 GACTCATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCACACAACACCGTCTTCG 284236 Query 349389 ATGCTAAGCGACTTATTGG 349407 |||| ||||| ||||| || Sbjct 284235 ATGCCAAGCGTCTTATCGG 284217 >seq18 Length=480229 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 341865 CATACCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATC 341806 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || |||||||| || || |||||||||||||| | || || || || || Sbjct 341805 TGATAGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGG 341746 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || |||||||| ||||| || | || || || ||||| | |||||| | ||| Sbjct 341745 TGGAATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTC 341686 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| |||||| || || || || ||||| || |||||||| Sbjct 341685 TACCTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 Score = 150 bits (166), Expect = 5e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||||| || ||||| |||||||| || || || || || || ||||| || Sbjct 341637 CATACCACCACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTC 341578 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || | ||| || || || ||||| |||||||| || || || Sbjct 341577 TGAGAGGGTTCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGG 341518 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || ||||| || || ||| || || || || || | |||||||| | Sbjct 341517 CGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCAGATGACT 341459 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || | ||||||||||| | || || || || |||||||| Sbjct 341458 CCACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407 Score = 120 bits (132), Expect = 9e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| |||||||||||||| ||||| || ||||| || | || | || || Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || |||||||| || | || || || || || || || ||||| || || Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955 Query 140646 TGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || || ||| || ||||||||||| | || || | || ||||| | |||| ||| Sbjct 341954 TGGATCTT-GCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGT 341896 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || || ||||| |||||||| Sbjct 341895 CTTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863 >seq17 Length=484702 Score = 91.5 bits (100), Expect = 4e-13 Identities = 154/222 (69%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | |||||||| | || | || || || || ||||| ||||| || || Sbjct 465610 CATTGCTGGTCTCAATGTTCTCCGTATCGTCAACGAGCCTACCGCTGCCGCAATCGCCTA 465669 Query 349735 TGGGCTTGATAAAATGAGT--GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||| ||| | || ||||| | || | | | ||| |||||||| Sbjct 465670 CGGTCT-----AAACCAGTCCGGCCCTGAAAAGCAAATCATCGTCTACGATCTAGGTGGT 465724 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||||||||||||||| || ||| | | ||||| || | || || || ||||| Sbjct 465725 GGTACTTTTGATGTATCTCTTCTATCCGTCGAAGATGGTGTATTCGAGGTCCTTGCAACA 465784 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 || || || |||||||| || ||||| || ||||| || ||| Sbjct 465785 GCAGGAGACACACATCTCGGAGGAGAGGACTTTGACAACCGT 465826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253060420407