Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 4e-15 seq5 95.1 1e-14 >seq2 Length=2148610 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 |||| || | || ||||| ||| || || || ||||||||||||||||| || | | Sbjct 698601 AACGCATCGTGGCGTTTGC-TGCTGTAGAGGGTATCTTCTTCTCTGGCTCTTTTGCTTCC 698659 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || || |||||||| ||||| || |||||||||||| ||| || ||||||||||| || Sbjct 698660 ATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATC 698719 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || | || || || || ||| || ||||| Sbjct 698720 TCGAGAGATGAAGGTCTACATACCGACTTTGC 698751 >seq5 Length=1549313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 79671 CTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTT 79730 |||||| || |||||| |||||| || ||||| ||||||||||| ||||| ||||| Sbjct 643329 CTTGGAAATCATCGCGCAAGTCTTGAGTGTGTCGTAAATGCCCTCGATAGAGTCATCCTT 643270 Query 79731 CATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGT 79790 ||| | ||||||||||||| ||||| || ||| | || ||||| ||| || || Sbjct 643269 CATTGTGACCAGGAAGCAGGAGGACATTTGAGGGGTAGGTGTGCCGGCAGCGAACAGAGT 643210 Query 79791 CGGCGTCGCGTGCGTGAAGAAC 79812 || | || ||||||||| || Sbjct 643209 TGGGGAAGCATGCGTGAAGTAC 643188 Score = 93.3 bits (102), Expect = 5e-14 Identities = 203/299 (68%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG-CACATCA 79351 ||||| ||| |||| |||| || || ||| || |||| || ||||| || | | Sbjct 643770 CTCGTCGAACTCCTCTCCATGCACTTCATGCATTCC-GGGCGCTTCAGCGGGACAGAAAA 643712 Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTC-CATGAAGAGGTCCGGGATCCACAGGGCC 79410 | ||||||| ||| || ||| || | || |||||| | ||| || ||||| || || Sbjct 643711 GAGGCCAGTCACCGTTCTGCTCGAC-TCGTCGCATGAACATGTCTGGAATCCAAAGAGCA 643653 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 ||| ||||| | | | || || | || || ||| || || || || ||| Sbjct 643652 AAGAAAAGGTCTCTAGCTCTGACTTCTTCTTTTCCGTGATTCTTGCGGAGATCAAGGAAG 643593 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | ||| || || ||||| ||||| | ||||| || || | ||| |||||| | Sbjct 643592 TCAAAGATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAGGTCGCTTGTTG 643533 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 || ||||| | || || || || || |||||||||||||| ||||| || ||||| || Sbjct 643532 CCACCCTGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCGGTACGATACC 643474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524326897360