Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 4e-15
seq5 95.1 1e-14
>seq2
Length=2148610
Score = 96.9 bits (106), Expect = 4e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038
|||| || | || ||||| ||| || || || ||||||||||||||||| || | |
Sbjct 698601 AACGCATCGTGGCGTTTGC-TGCTGTAGAGGGTATCTTCTTCTCTGGCTCTTTTGCTTCC 698659
Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098
|| || |||||||| ||||| || |||||||||||| ||| || ||||||||||| ||
Sbjct 698660 ATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCGGGCTTGACGTTTTCCAACGAGCTCATC 698719
Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130
|| | || || || || ||| || |||||
Sbjct 698720 TCGAGAGATGAAGGTCTACATACCGACTTTGC 698751
>seq5
Length=1549313
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 79671 CTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTT 79730
|||||| || |||||| |||||| || ||||| ||||||||||| ||||| |||||
Sbjct 643329 CTTGGAAATCATCGCGCAAGTCTTGAGTGTGTCGTAAATGCCCTCGATAGAGTCATCCTT 643270
Query 79731 CATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGT 79790
||| | ||||||||||||| ||||| || ||| | || ||||| ||| || ||
Sbjct 643269 CATTGTGACCAGGAAGCAGGAGGACATTTGAGGGGTAGGTGTGCCGGCAGCGAACAGAGT 643210
Query 79791 CGGCGTCGCGTGCGTGAAGAAC 79812
|| | || ||||||||| ||
Sbjct 643209 TGGGGAAGCATGCGTGAAGTAC 643188
Score = 93.3 bits (102), Expect = 5e-14
Identities = 203/299 (68%), Gaps = 4/299 (1%)
Strand=Plus/Minus
Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG-CACATCA 79351
||||| ||| |||| |||| || || ||| || |||| || ||||| || | |
Sbjct 643770 CTCGTCGAACTCCTCTCCATGCACTTCATGCATTCC-GGGCGCTTCAGCGGGACAGAAAA 643712
Query 79352 GGTGCCAGTCCTCGTCCTTCTCAACCTTCTC-CATGAAGAGGTCCGGGATCCACAGGGCC 79410
| ||||||| ||| || ||| || | || |||||| | ||| || ||||| || ||
Sbjct 643711 GAGGCCAGTCACCGTTCTGCTCGAC-TCGTCGCATGAACATGTCTGGAATCCAAAGAGCA 643653
Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470
||| ||||| | | | || || | || || ||| || || || || |||
Sbjct 643652 AAGAAAAGGTCTCTAGCTCTGACTTCTTCTTTTCCGTGATTCTTGCGGAGATCAAGGAAG 643593
Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530
|| | ||| || || ||||| ||||| | ||||| || || | ||| |||||| |
Sbjct 643592 TCAAAGATATCTGCATGCCATGGCTCGATGTAGATAGCAAAGGCACCAGGTCGCTTGTTG 643533
Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589
|| ||||| | || || || || || |||||||||||||| ||||| || ||||| ||
Sbjct 643532 CCACCCTGATCAACATAACGCGCAGTATTGTTGAAAACTCGCAGCATCGGTACGATACC 643474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524326897360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |