Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq3 93.3 5e-14 >seq5 Length=1549313 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGT 55786 |||||| || ||| ||| || |||||||| || || || | | || |||||| | Sbjct 644746 TCAAGGCTATCTACAAGACAGTCTGGGAGATCAGCCAAAA-AGCCATCATCGACATGTCT 644804 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||| ||| ||| |||||||| || || |||||| | | || | ||| Sbjct 644805 GCTGACCGTGGTCCGTTCATTGACCAGTCACAATCACTGAACGTACACTTGCAATCGCCT 644864 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || | || || | | || ||||||||||||||||||||||||||| | || ||||| Sbjct 644865 ACATTCGCACAGCTCACATCCATGCACTTTTACGGGTGGAAGAAGGGATTGAAAACGGGA 644924 Query 55907 ATGTACTATCTGCGGACC 55924 ||||||||||| || ||| Sbjct 644925 ATGTACTATCTCCGAACC 644942 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 53269 GTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTC 53328 |||||| ||||| || | ||||| |||||| || || || | |||||| ||||| Sbjct 643188 GTACTTCACGCATGCTTCCCCAACTCTGTTCGCTGCCGGCACACCTACCCCTCAAATGTC 643247 Query 53329 GAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 |||||||||||| | |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 643248 CTCCTGCTTCCTGGTCACAATGAAGGATGACTCTATCGAGGGCATTTACGACACACTCAA 643307 Query 53389 GGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 | || || || |||||| | |||||||| || Sbjct 643308 GACTTGCGCGATGATTTCCAAGAATGCTGGTGGTATTGG 643346 >seq3 Length=2053931 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 152866 TTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACC 152925 ||||||| ||| | || | |||||||| || | | | ||||| || || |||| Sbjct 66008 TTTCCATTTTGTAAGCCTAAAATCTTTTTCAGATGCGCTATTTCCTGGTTCTCTGTCAAT 66067 Query 152926 TGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAAC 152985 || || | |||||| || |||||| | ||||||| | || || || ||||| | Sbjct 66068 TGCTTGCCAACGGCATCTCGGACATTGAGTAGCTTTCCTCTTAGCGGGAAAACGCCATAG 66127 Query 152986 GCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCG 153045 | | |||||| || || ||||| | |||||||| | ||| || |||||||| || Sbjct 66128 GTATCGCGGCCAACCACAGAAAGACCCGAAATAGCAAATGTTTTGGCGGAGTCACCTTCT 66187 Query 153046 GTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGC 153105 |||| ||| ||||| || | | | | | || || ||| |||||| ||||| ||| Sbjct 66188 GTGAGAATGAGCGTGCAATGGCGTGCATCTTTCGTGCCAGCCTTGTTGGCATCGTCCAGC 66247 Query 153106 TTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCA 153154 || | ||| || || | ||||| |||||||||||||||| Sbjct 66248 TTAGCGATGCCAAGCATGCGCGACCGCTTAGTTCCGTCGGTTTTCTTCA 66296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215528026200