Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18 176 5e-39 seq1 113 5e-20 >seq18 Length=480229 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| ||||| || ||||||||||| |||||| | Sbjct 341407 ATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCT 341466 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| || || |||||||||||||| ||||| || ||||| Sbjct 341467 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAA 341526 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || |||||| | ||||||| || ||||| |||||||||| Sbjct 341527 CAACGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAAC 341586 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| |||||||| || | || || || ||||| Sbjct 341587 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTCCGACTACGTGGTGG 341633 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| ||||| | || || ||||| Sbjct 341863 ATGCAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCC 341922 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| || || || |||||||| || || || || ||||| Sbjct 341923 GACACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAA 341982 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||||||||||||||| || ||||| | | || || | || || || Sbjct 341983 CAGCGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAAC 342042 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||||| ||||| ||| | |||||| | ||||| Sbjct 342043 ATTCAGAAAGAGTCTACTCTCCATCTCGTCCTCCGTCTTAGAGGTGG 342089 >seq1 Length=2538488 Score = 113 bits (124), Expect = 5e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27434 GCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAA 27493 ||||||| || || || ||||| ||||| || | ||| | ||| | ||| | || | Sbjct 608135 GCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGA 608076 Query 27494 TTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 | |||||||||||||| || || || ||||| ||||| || || || ||||| ||||| | Sbjct 608075 TCCAGGACAAGGAGGGCATCCCACCCGACCAACAGCGACTGATCTTCGCTGGAAAGCAGC 608016 Query 27554 TCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||| || | || ||||| | ||||| || |||| ||||| |||||||| || Sbjct 608015 TCGAAGACGGACGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 607961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309908107280