Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18 176 1e-38 seq1 149 1e-30 seq5 91.5 3e-13 >seq18 Length=480229 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || || ||||| ||||| || || ||||||||||| || | ||||| Sbjct 341628 ACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGT 341569 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || | ||||| || ||||||||||| ||||||||||| || |||| || Sbjct 341568 TCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCC 341509 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||| ||||| || ||||| || Sbjct 341508 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAG 341449 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || | ||||| || || | |||||| Sbjct 341448 AGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| |||||||| || ||||| ||||||| ||| |||||||| || Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || || | || |||||||| || || | ||||||||||| Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| || || || || | || || ||| Sbjct 341954 TGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTC 341895 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 341894 TTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863 >seq1 Length=2538488 Score = 149 bits (164), Expect = 1e-30 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 || ||| ||||||||||| || |||||||| || || | ||||| | ||| ||||| || Sbjct 607957 AACGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAG 608016 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || |||||||| || || |||||||| || || | || |||||||||||||| Sbjct 608017 CTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGAT 608076 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || || ||||||||||| ||| || |||||||| ||||| ||||| Sbjct 608077 CTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133 >seq5 Length=1549313 Score = 91.5 bits (100), Expect = 3e-13 Identities = 215/324 (66%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 178121 GCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGC 178180 |||||||||||| ||||| || ||| |||| || || | |||||| || | Sbjct 643892 GCATCTTTGTACAGCATGAAAGGTCCTCCGGTTTCAGTCTGGGCTTCAAGAATGGCATAC 643833 Query 178181 CAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAG 178240 || |||| ||| || | | |||||| || |||||| |||| || | | || Sbjct 643832 CATAGCTTCTGCGCAGGAATGACCTTTTTCGCGCGTCCTTCGCTCTCATATCGTAGGAAG 643773 Query 178241 AGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAG 178300 ||||| ||||| ||| ||||| || |||| | ||||| || ||| ||| ||||| Sbjct 643772 AGCTCGTCGAACTCCTCTCCATGCACTTCATGCATTCCGGGCGCTTCAGCGGGACAGAAA 643713 Query 178301 AGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCA 178360 ||| ||| | ||||| | || |||||| |||||| | ||| | |||| | ||| Sbjct 643712 AGAGGCCAGTCACCGTTCTGCTCGACTCGTCGCATGAACATGTCTGGAATCCAAAGAGCA 643653 Query 178361 TAGAAAATCTCTCTGGCTCTCATCAGGTCATTTCCTCCGGGTTTTCTGGC----ATCAAC 178416 |||||| ||||| ||||| | || ||||| | |||| || ||||| Sbjct 643652 AAGAAAAGGTCTCTAGCTCTGACTTCTTCTTTTCC----GTGATTCTTGCGGAGATCAAG 643597 Query 178417 AAAGTCAAAAATGTCCACATGCCA 178440 |||||||| || || ||||||| Sbjct 643596 GAAGTCAAAGATATCTGCATGCCA 643573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150975237185