Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq18 176 1e-38
seq1 149 1e-30
seq5 91.5 3e-13
>seq18
Length=480229
Score = 176 bits (194), Expect = 1e-38
Identities = 172/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| |||| || || || ||||| ||||| || || ||||||||||| || | |||||
Sbjct 341628 ACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGT 341569
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||| || | ||||| || ||||||||||| ||||||||||| || |||| ||
Sbjct 341568 TCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCC 341509
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| |||||||| ||||| || ||||| ||
Sbjct 341508 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAG 341449
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| |||||||| || | ||||| || || | ||||||
Sbjct 341448 AGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || ||||| |||||||| || ||||| ||||||| ||| |||||||| ||
Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || || || | || |||||||| || || | |||||||||||
Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || |||||||| || || || || | || || |||
Sbjct 341954 TGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTC 341895
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| ||||| | ||||||
Sbjct 341894 TTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863
>seq1
Length=2538488
Score = 149 bits (164), Expect = 1e-30
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967
|| ||| ||||||||||| || |||||||| || || | ||||| | ||| ||||| ||
Sbjct 607957 AACGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAG 608016
Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027
|||||| || |||||||| || || |||||||| || || | || ||||||||||||||
Sbjct 608017 CTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGAT 608076
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
||| || || || ||||||||||| ||| || |||||||| ||||| |||||
Sbjct 608077 CTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133
>seq5
Length=1549313
Score = 91.5 bits (100), Expect = 3e-13
Identities = 215/324 (66%), Gaps = 8/324 (2%)
Strand=Plus/Minus
Query 178121 GCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGC 178180
|||||||||||| ||||| || ||| |||| || || | |||||| || |
Sbjct 643892 GCATCTTTGTACAGCATGAAAGGTCCTCCGGTTTCAGTCTGGGCTTCAAGAATGGCATAC 643833
Query 178181 CAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAG 178240
|| |||| ||| || | | |||||| || |||||| |||| || | | ||
Sbjct 643832 CATAGCTTCTGCGCAGGAATGACCTTTTTCGCGCGTCCTTCGCTCTCATATCGTAGGAAG 643773
Query 178241 AGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAG 178300
||||| ||||| ||| ||||| || |||| | ||||| || ||| ||| |||||
Sbjct 643772 AGCTCGTCGAACTCCTCTCCATGCACTTCATGCATTCCGGGCGCTTCAGCGGGACAGAAA 643713
Query 178301 AGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCA 178360
||| ||| | ||||| | || |||||| |||||| | ||| | |||| | |||
Sbjct 643712 AGAGGCCAGTCACCGTTCTGCTCGACTCGTCGCATGAACATGTCTGGAATCCAAAGAGCA 643653
Query 178361 TAGAAAATCTCTCTGGCTCTCATCAGGTCATTTCCTCCGGGTTTTCTGGC----ATCAAC 178416
|||||| ||||| ||||| | || ||||| | |||| || |||||
Sbjct 643652 AAGAAAAGGTCTCTAGCTCTGACTTCTTCTTTTCC----GTGATTCTTGCGGAGATCAAG 643597
Query 178417 AAAGTCAAAAATGTCCACATGCCA 178440
|||||||| || || |||||||
Sbjct 643596 GAAGTCAAAGATATCTGCATGCCA 643573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150975237185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |