Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq18 149 1e-30
seq1 147 5e-30
seq9 100 7e-16
>seq18
Length=480229
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||| || || || || || |||||||| || |||| || || || | | ||
Sbjct 341628 ACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGT 341569
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| |||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 341568 TCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCC 341509
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || |||||||| || || | ||||| || |
Sbjct 341508 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAG 341449
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || ||||| || || | ||| | |||||
Sbjct 341448 AGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407
Score = 140 bits (154), Expect = 8e-28
Identities = 145/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || |||||||| || ||||| || | |||||||| | | ||| || || ||
Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| || || | ||| ||||||||||| || || ||||||||||||
Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| || |||||||| || | || || || || || || |||
Sbjct 341954 TGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTC 341895
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 341894 TTGCCTGTCA 341885
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || || || || || || || | |||||||| | | || | ||||||
Sbjct 341846 AGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCATCT 341787
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| | ||| ||||||||||| ||||| || || || |||
Sbjct 341786 TCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 341727
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || || ||||| || || | ||| || || | || || |||
Sbjct 341726 TGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTC 341667
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || |||| ||| | |||||
Sbjct 341666 TTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635
>seq1
Length=2538488
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225507 AAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAG 225566
|| |||||||||||| || || |||| ||||| |||| | |||| || ||||| ||
Sbjct 607957 AACGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAG 608016
Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626
|||||| ||||||||||| ||||| ||||||||||| || || || |||||||| |||||
Sbjct 608017 CTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGAT 608076
Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685
||| ||| ||| ||||||||||| |||| || || || | ||||| |||||||
Sbjct 608077 CTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135
>seq9
Length=694842
Score = 100 bits (110), Expect = 7e-16
Identities = 205/305 (67%), Gaps = 0/305 (0%)
Strand=Plus/Minus
Query 7427 CGAAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTA 7486
|||| || | | ||| ||||| |||| |||| | |||||| ||||| |||||||
Sbjct 312507 CGAAAGACATTGGAACACTATATCTAATCTTTGCTATCTTTTCAGGTATGTTAGGTACAG 312448
Query 7487 TATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTA 7546
|||||| || | || | | || |||||| |||| ||| ||| || | | ||||
Sbjct 312447 CATTTTCAGTGTTAATCCGAATGGAGTTAGCTTCTCCAGGTGTACAAGTACTTAACGGTA 312388
Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606
| ||| | || ||||| || || || || || || | ||||| ||||| | |
Sbjct 312387 ACCACCAGTTATATAACGTAATCATCACAGCTCACAGATTCTTGATGATCTTCTTCATGG 312328
Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666
||||||| | | | | || || ||||| || | | ||||| || ||||| ||||
Sbjct 312327 TTATGCCTGCTCTTGTGGGGGGATTCGGTAACTATCTAGTTCCAGTACAAATTGGAGCTC 312268
Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726
|||||||||| || || | | || || || ||| ||| | ||||| ||||| |||
Sbjct 312267 CTGATATGGCATTCCCTCGATTGAATAACATTTCTTTCTGACTGCTACCACCTTCTTTAA 312208
Query 7727 TTCTA 7731
|| ||
Sbjct 312207 TTTTA 312203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530145727886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |