Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18 149 1e-30 seq1 147 5e-30 seq9 100 7e-16 >seq18 Length=480229 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || |||||||| || |||| || || || | | || Sbjct 341628 ACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGT 341569 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| |||| |||||||| ||||||||||| |||||||||||||||||||| || Sbjct 341568 TCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCC 341509 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || |||||||| || || | ||||| || | Sbjct 341508 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAG 341449 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || ||||| || || | ||| | ||||| Sbjct 341448 AGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| || ||||| || | |||||||| | | ||| || || || Sbjct 342074 AGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCC 342015 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || | ||| ||||||||||| || || |||||||||||| Sbjct 342014 TCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCT 341955 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| || | || || || || || || ||| Sbjct 341954 TGGATCTTGCTCTTGACATTATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTC 341895 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 341894 TTGCCTGTCA 341885 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || || || || || | |||||||| | | || | |||||| Sbjct 341846 AGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGATAGCGTACGTCCATCT 341787 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | ||| ||||||||||| ||||| || || || ||| Sbjct 341786 TCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 341727 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||| || || | ||| || || | || || ||| Sbjct 341726 TGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTACCTCCAGGGTAATTGTC 341667 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || |||| ||| | ||||| Sbjct 341666 TTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 >seq1 Length=2538488 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225507 AAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAG 225566 || |||||||||||| || || |||| ||||| |||| | |||| || ||||| || Sbjct 607957 AACGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAG 608016 Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 |||||| ||||||||||| ||||| ||||||||||| || || || |||||||| ||||| Sbjct 608017 CTGCTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGAT 608076 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 ||| ||| ||| ||||||||||| |||| || || || | ||||| ||||||| Sbjct 608077 CTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGC 608135 >seq9 Length=694842 Score = 100 bits (110), Expect = 7e-16 Identities = 205/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 7427 CGAAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTA 7486 |||| || | | ||| ||||| |||| |||| | |||||| ||||| ||||||| Sbjct 312507 CGAAAGACATTGGAACACTATATCTAATCTTTGCTATCTTTTCAGGTATGTTAGGTACAG 312448 Query 7487 TATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTA 7546 |||||| || | || | | || |||||| |||| ||| ||| || | | |||| Sbjct 312447 CATTTTCAGTGTTAATCCGAATGGAGTTAGCTTCTCCAGGTGTACAAGTACTTAACGGTA 312388 Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606 | ||| | || ||||| || || || || || || | ||||| ||||| | | Sbjct 312387 ACCACCAGTTATATAACGTAATCATCACAGCTCACAGATTCTTGATGATCTTCTTCATGG 312328 Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666 ||||||| | | | | || || ||||| || | | ||||| || ||||| |||| Sbjct 312327 TTATGCCTGCTCTTGTGGGGGGATTCGGTAACTATCTAGTTCCAGTACAAATTGGAGCTC 312268 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726 |||||||||| || || | | || || || ||| ||| | ||||| ||||| ||| Sbjct 312267 CTGATATGGCATTCCCTCGATTGAATAACATTTCTTTCTGACTGCTACCACCTTCTTTAA 312208 Query 7727 TTCTA 7731 || || Sbjct 312207 TTTTA 312203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530145727886