Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 107 3e-18 seq2 95.1 2e-14 >seq5 Length=1549313 Score = 107 bits (118), Expect = 3e-18 Identities = 323/496 (65%), Gaps = 2/496 (0%) Strand=Plus/Minus Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 |||||| || || || || || |||| | || | ||||| || ||||| || || Sbjct 644636 AGGATTGACAATCTGGAACTCGCCAGCTAGCACGCGGCGAGTATAGATATTCGACGTGTA 644577 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||| || | | || ||| || | ||||| | ||||| ||||||||||| || || Sbjct 644576 TGGCTCAAAGCACTCGTTGAAGCCGAGGATTTGCGAGGTAGAGGCAGTTGGCATGGGAGC 644517 Query 77234 CACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAAT 77292 | | | | || | || |||||| || | |||| | || || || | ||| | Sbjct 644516 GAGGAGGAGAGAGTTGCGGATACCATGCTGCT-TGATCTGGTCCTTGAGCGAAGCCCAGT 644458 Query 77293 CCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352 |||| || || ||||| || |||| | ||| || || || ||| || ||| Sbjct 644457 CCCAGAGTTCGGAAGGAGTGACTCCCCATAAATCATACTGAAGTTCTCCCTTCGATGCAG 644398 Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 ||||| | || || ||||| || ||| || |||||| || || || || | Sbjct 644397 GAGATCCCTCGTAGGTGGGGTAAGGACCCTCTTCTTGAGCTAGCTCGCACGATGCCTCGA 644338 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 |||| ||| ||| || || ||||| |||| ||| ||||| || | |||| ||| || Sbjct 644337 GTGCTGCGTGATAGATAGTCTCGAAGATCTGCTTGTTGAGTTCCTTAGCTTGCATAGAAT 644278 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 | || || ||| | | | || || ||||| || | || || || || ||||| || | Sbjct 644277 CGAAGGGGTAACGAAGAGCCATGAAAGCATCGGCGAGACCTTGTACACCGATACCGATGG 644218 Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592 ||| |||| |||||| | || ||||| |||| ||||| | || | || |||| Sbjct 644217 GTCGGTGTCGGAGATTGGACTTCTTTGCTTCAGGAACGGGATAGAAGTTGACATCGATAA 644158 Query 77593 TTTTATTGAGATTTCT 77608 || || |||||||| Sbjct 644157 CCTTGTTCAGATTTCT 644142 >seq2 Length=2148610 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||| || ||||| || ||| |||||||||||||| || | ||||| ||||| || Sbjct 698758 TAAGCAAGCAAAGTCGGTATGTAGACCTTCATCTCTCGAGATGAGCTCGTTGGAAAACGT 698699 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 | || ||||| || || || || ||||||||||| || | || ||||| ||||| || Sbjct 698698 CAAGCCCGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAGAA 698639 Query 48257 GAATATGCCTTCTACGGCCGCAAATGC 48283 ||| || || ||||| || ||||| || Sbjct 698638 GAAGATACCCTCTACAGCAGCAAACGC 698612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668200848160