Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03- 01] 69 sequences; 21,721,408 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 190 4e-43 seq16 129 1e-24 seq1 105 1e-17 >seq18 Length=480229 Score = 190 bits (210), Expect = 4e-43 Identities = 181/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||||||| | ||| ||| || |||||||| ||||| | Sbjct 341634 ACCACCACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGA 341575 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||||| ||| |||||||| ||||| | |||||||||||| ||| Sbjct 341574 GAGGGTTCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGG 341515 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| |||||| ||||| || ||| | ||||| || || || | || | Sbjct 341514 AATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCA 341456 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 341455 CCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| ||||| |||||||| | || || || || |||||||| || | Sbjct 341862 ACCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGA 341803 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| || ||||| || || || || || ||||||||||| || |||||||| || Sbjct 341802 TAGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGG 341743 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| || ||||| ||||| | || ||| | || || || || |||| ||| || Sbjct 341742 AATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTAC 341683 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 341682 CTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635 Score = 132 bits (146), Expect = 1e-25 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| | || || || || ||||| | || ||||| || |||||||| || | Sbjct 342091 AACCACCTCTAAGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCG 342032 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || | || ||||| || || || || ||||| ||||| || |||||||| | Sbjct 342031 AAAGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTG 341972 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 | || || ||||||||||||||| ||||| || || |||| || ||||| |||| ||| Sbjct 341971 GGATGCCTTCCTTGTCTTGGATC-TTGCTCTTGACATTATCAATGGTGTCGGAAGACTCG 341913 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | || || ||||| || |||| ||||| || || |||||||| Sbjct 341912 ACTTCCAAGGTAATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863 >seq16 Length=487666 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 || || || ||||| ||| ||||||| || || ||||| || || |||| |||| ||| Sbjct 197620 CAGGCTTCAACATCCGAGCTGTACGGCAAAGTACAGGAAATCCCGCAAAGCGAAAAGACA 197561 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || || || || || ||| || ||||| ||||||||||| ||||| ||||| ||| Sbjct 197560 CCCTTCTACCCTCGCTCTCCCTACGGTGTAGCGAAGCTATACGCCTACTGGATAGTCAAA 197501 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 ||||| |||||||| ||||| ||| || | |||| ||| ||||||||||||| Sbjct 197500 AATTACCGCGAGTCTTATGGTATGCACGCATCTAATGGAATTCTTTTCAATCACGAATCG 197441 Query 44164 CCCAACAGA-GGTCATCAGTTCGTGACTCGTAAAATCACG 44202 || | ||| || | || ||||| || |||||||| ||| Sbjct 197440 CCAAGAAGAGGGAGAACA-TTCGTCACGCGTAAAATAACG 197402 >seq1 Length=2538488 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || || || || || || || || || || || ||| Sbjct 607973 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCAGCGAAG 608032 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || |||||||| || || ||||||||||| |||||||| | || || | Sbjct 608033 ATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 608092 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| ||||| || | ||||| ||||| ||||| ||||| Sbjct 608093 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738274617126