Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq18 105 5e-18
seq1 87.8 1e-12
>seq18
Length=480229
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| ||| | | ||||| || || || |||||| || |||||||||||
Sbjct 341865 CATACCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATC 341806
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || || |||||||| || ||||||||||| ||||| || || |
Sbjct 341805 TGATAGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGG 341746
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | || || || || ||||| ||| | | | ||||| || | |||||
Sbjct 341745 TGGAATGCCCTCTTTATCTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTC 341686
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| ||||| ||||| || || |||||||| |||||||| |||||
Sbjct 341685 TACCTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| ||||| ||| ||||| |||||||| || || | ||| || | || ||
Sbjct 341615 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAGAGGGTTCGTCCATCCTCT 341556
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||||||||||| ||||| | ||| || || || | || | || ||||| |||
Sbjct 341555 AATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 341496
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | ||||| || | || |||||||| | || || ||||||
Sbjct 341495 ATCTTGCTCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAGAGTGATGGTCTTT 341436
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||||||||||||| |||||
Sbjct 341435 CCGGTCAAGGTCTTCACGAAGATCTGCAT 341407
Score = 95.1 bits (104), Expect = 9e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| || || ||||||||||| | || | |||| ||||||||||| || |||||
Sbjct 342054 CTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAA 341995
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||| ||||| || || | || | |||||||| || ||||| ||| | |
Sbjct 341994 AATCAATCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTTGACATT 341935
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||||| || || || |||| ||||| ||||| || || || ||||| ||
Sbjct 341934 ATCAATGGTGTCGGAAGACTCGACTTCCAAGGTAATTGTCTTGCCTGTCAGCGTCTTGAC 341875
Query 44326 GAAGATTTGCAT 44337
||||| |||||
Sbjct 341874 AAAGATCTGCAT 341863
>seq1
Length=2538488
Score = 87.8 bits (96), Expect = 1e-12
Identities = 126/176 (72%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193
||| || ||| |||||| ||||||||||| |||| ||| || |||| || |||||
Sbjct 607960 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTG 608019
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| || || ||||||| ||||| || || | || | || ||||| ||| |||||
Sbjct 608020 CTTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTT 608079
Query 44254 CTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||| || ||| | |||||||||| ||| || ||||| | || || |||||
Sbjct 608080 GGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 608133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990097270573
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |