Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq18 145 2e-29
seq1 136 1e-26
>seq18
Length=480229
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || ||||| || ||||| || |||||||| || ||
Sbjct 341410 CAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTGGAGTCATCTGAT 341469
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || || || || ||||| |||
Sbjct 341470 ACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAACAA 341529
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||||||||| || || | || |||||| | || || | || |||||| ||
Sbjct 341530 CGTCTTATCTTCGCCGGGAAGCAATTAGAGGATGGACGAACCCTCTCAGACTATAACATC 341589
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || ||||| || || ||||| ||| | ||||
Sbjct 341590 CAGAAGGAATCCACCCTTCATCTGGTTCTCCGACT 341624
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || || ||||| ||||| ||| || ||
Sbjct 341638 CAGATCTTCGTAAAGACCCTGACTGGCAAGACAATTACCCTGGAGGTAGAATCTTCTGAT 341697
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||| || ||||| || || || || ||||| ||
Sbjct 341698 ACCATTGACAACGTCAAGTCCAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAACAG 341757
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||| || ||||| ||||||||||||||| | || || | ||||| ||| |
Sbjct 341758 CGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGACGTACGCTATCAGATTACAACATT 341817
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || |||||||| |||
Sbjct 341818 CAGAAGGAGTCGACCCTGCATCTGGTT 341844
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || ||||| || || || ||| | || || || || |||
Sbjct 341866 CAGATCTTTGTCAAGACGCTGACAGGCAAGACAATTACCTTGGAAGTCGAGTCTTCCGAC 341925
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| || ||||| ||||| ||||| || ||||| ||
Sbjct 341926 ACCATTGATAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAACAG 341985
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || || || || ||||| || || |||||||||||| | ||||| ||| |
Sbjct 341986 CGATTGATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACTCTTTCGGATTACAACATT 342045
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || || || ||||| ||
Sbjct 342046 CAGAAAGAGTCTACTCTCCATCTCGT 342071
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005
|||| || || |||||||||||||| || || ||||||||||| || ||||| |
Sbjct 340978 CAGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCCA 341037
Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTT 178054
|||| || ||||| || || |||||||| |||||||| || || |||||
Sbjct 341038 AGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTT 341086
>seq1
Length=2538488
Score = 136 bits (150), Expect = 1e-26
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010
|| || |||||||||||||| || ||| ||||||||||| || ||||| |||||
Sbjct 608133 AAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATC 608074
Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070
|||||||| || || ||||| || ||||| || ||||| |||||||| ||||| ||||||
Sbjct 608073 CAGGACAAGGAGGGCATCCCACCCGACCAACAGCGACTGATCTTCGCTGGAAAGCAGCTC 608014
Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123
||||| ||| | || || |||| || ||| |||| || || || || || ||
Sbjct 608013 GAAGACGGACGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 607961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730135826386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |