Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cystobasidium_20pallidum_20[genbank_20GCA_5F001599955.1_202016-03-
01] 69 sequences; 21,721,408 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq18 125 7e-24
seq1 111 1e-19
>seq18
Length=480229
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || ||||| || | |||||||| || ||| |||||||| ||||||||||| |||
Sbjct 341633 CCACCACGTAGTCGGAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTATAGTCTGAG 341574
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || | ||||| |||||||| || || || |||||||| | |||
Sbjct 341573 AGGGTTCGTCCATCCTCTAATTGCTTCCCGGCGAAGATAAGACGTTGTTGGTCGGGCGGA 341514
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | || || ||||||||
Sbjct 341513 ATGCCCTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCGATGGTATCAGATGACTCCAC 341455
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || |||| ||||| ||||| ||||||||
Sbjct 341454 CTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 341407
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||||||||| || ||||||||||||||| || || ||
Sbjct 341861 CCACCTCGCAGCCGAAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCTGAT 341802
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| || || || |||| ||||||||||| | |||
Sbjct 341801 AGCGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCGGGTGGA 341742
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||| || | | ||| | || | | ||| | | | || || || || ||
Sbjct 341741 ATGCCCTCTTTAT-CTTGAATCTTGGACTTGACGTTGTCAATGGTATCAGAAGATTCTAC 341683
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || ||||| ||||||||||| ||||||||
Sbjct 341682 CTCCAGGGTAATTGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 341635
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || || ||| ||||||||||| || || || || || |
Sbjct 342080 AGACGGAGGACGAGATGGAGAGTAGACTCTTTCTGAATGTTGTAATCCGAAAGAGTCCTT 342021
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||| || || || |||| ||||||||||| | || | || |||
Sbjct 342020 CCGTCCTCCAGCTGCTTACCAGCAAAAATCAATCGCTGTTGGTCGGGTGGGATGCCTTCC 341961
Query 41765 TTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
||||| ||| || ||| | | | | | |||||| ||||| || |||| ||
Sbjct 341960 TTGTCTTGGATCTTGCTCTTGACATTATCA-ATGGTGTCGGAAGACTCGACTTCCAAGGT 341902
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||||||||| || || ||||||||
Sbjct 341901 AATTGTCTTGCCTGTCAGCGTCTTGACAAAGATCTGCAT 341863
>seq1
Length=2538488
Score = 111 bits (122), Expect = 1e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719
|| || ||| ||||||||| ||||| |||||||||||||| || |||| |||||||||
Sbjct 607961 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGCTGC 608020
Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| || ||||| ||||| ||||||||||| | || | || |||||||||| ||| ||
Sbjct 608021 TTTCCAGCGAAGATCAGTCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTT 608079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303601262800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |