Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dacryopinax_20primogenitus_20[genbank_20GCA_5F000292625.1_202012-08- 23] 99 sequences; 29,503,487 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq6 105 8e-18 seq9 98.7 1e-15 >seq1 Length=2114445 Score = 136 bits (150), Expect = 5e-27 Identities = 204/285 (72%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||||||||| || ||| || || |||||||| || | ||| Sbjct 847622 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAGACCGCGCTTC 847563 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || | ||| ||||||||| || || || |||||||||||||||||| |||||| Sbjct 847562 TTCATCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACAGCGGCGAAG 847503 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCG-AGACTTGTC---GAACCACTTGAGAGCCCAGTT 119689 |||| ||||| ||||| |||||||| | |||||| || ||| || | ||||||| Sbjct 847502 GCGACGAGACGTTCAGC-AAAGGTCGAACGCTTGTCCGAGATCCATTTCAATGCCCAGTC 847444 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG---TTGCTTCTTTTC 119746 |||||| |||| ||||| || | || | ||||| ||||| || || || ||| Sbjct 847443 GGCCTTGCGCTTAATGCATGGAATGGTATCAATGGCATCGAAGAGATATTCACGCTGTTC 847384 Query 119747 AGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 | ||||||| || ||| | ||||| || |||||| ||||| Sbjct 847383 GG---CATCCTTGATGTATGTGTCAATCAGGAGAGAGTATGTCTC 847342 >seq6 Length=1460661 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 ||||| || || | |||||| ||||| ||||||||||| || ||| ||| ||| Sbjct 1096511 TTGGCGCGGATATTGTGGATGTGCATTCCAATACCACCAGCGGTCTTGGAAATCATTGCG 1096452 Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978 || ||| |||| ||| |||| || || || || || |||| |||||| || || Sbjct 1096451 CATGTCT-TGAGGGTATCATAGATGCCCTCGATACTGTCGTCCTTCATGGCAACCAGGAA 1096393 Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAAT 111038 || ||||| | ||||||| | ||||| || ||||||||||| || || | || || | Sbjct 1096392 ACAGGAAGAGAGCTGAGGATGGGGCGTGCCGGCATTGAAGAGCGTCGGGCTAGCGTGTGT 1096333 Query 111039 GAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098 ||| | | ||||||| | |||| || | | |||| | | |||| ||||| Sbjct 1096332 GAAGTACCGCTCGGACATCAGGGTGTAGGTTGCTAATGCGCGGTCAATATCTCGGCCGTG 1096273 Query 111099 AATACCAATGGCAACTCGCATGAACAT 111125 ||||||||||| || ||||| | ||| Sbjct 1096272 TATACCAATGGCTACACGCATCAGCAT 1096246 >seq9 Length=1254216 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 |||| ||| |||| |||||||||||| |||||||| | ||| || || || || Sbjct 856400 ACGCGACTTGCCGATAGCGTCAATCTCGTCGATGAAGATGATGCAGGGAGCGTGCTTCCG 856341 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| |||| || || || ||||| | || ||||| ||||||||||| ||||| Sbjct 856340 CGCCGAGGCGAAGAGGTCTCGCACACGGGAAGGGCCGACACCGACGAACATCTCTACGAA 856281 Query 11787 GTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | | | | || ||| | | |||||| || || | ||| |||||| |||| ||||| Sbjct 856280 CTCGGAGCCGGAGACAGAG-AGGAAGGGCACGTTCGCCTCGCCAGCGGTGGCCTTAGCGA 856222 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | || |||||||| || || || | || | ||| | || |||||||| || || || | Sbjct 856221 GCAGGGTCTTACCTGTTCCTGGAGGGCCGGAGAGGATCGCCCCACGGGGAATTTTAGCGC 856162 Query 11906 C 11906 | Sbjct 856161 C 856161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975271142200