Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 199 4e-46 seq4 143 3e-29 >seq1 Length=4122216 Score = 199 bits (220), Expect = 4e-46 Identities = 189/239 (79%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||||||||| || || || ||| |||| |||||||||| ||||||||| ||||| Sbjct 3090178 ACGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATTA 3090237 Query 117012 CCGGCAGAGAGG-CCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | | |||| | || |||||| ||||||||| | ||||| || ||||||||||| || Sbjct 3090238 CAGAC-GAGAAGTCCACCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTCGAGGGTATC 3090296 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || ||| |||||| |||| || ||||||||||| || || ||||||||||| Sbjct 3090297 TTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGT 3090356 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 || || ||| |||||||||||||||| | || |||||||| || |||||||||||| Sbjct 3090357 CTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTG 3090415 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| ||||||||||||||| |||| ||||| ||| Sbjct 3074232 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAG 3074173 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | ||| || | | | ||||||||||| || ||| | |||| Sbjct 3074172 CGACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAAGAGGGTATTCCCCCAGACC 3074114 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||| | || | ||| ||||||||||| || |||| ||| || || |||||||| Sbjct 3074113 AGCAGCGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACA 3074054 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| | || || || || || |||| |||||||| || Sbjct 3074053 ACATCCAGAAGGAGTCTACACTTCACCTCGTTCTGCGATTGAGGGGAGG 3074005 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || |||||||| |||| || || | |||||| | | | |||||| Sbjct 3073648 ACCGGAAAGACCATCACTCTCGAAGTTGAGTCGTCCGACACGATCGACAATGTCAAGGCG 3073589 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||| |||||| | ||||||||||||||||||| || || || Sbjct 3073588 AAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAACGACTCATCTTTGCCGGGAAG 3073529 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| | | || | | |||||||||||||||||||||| ||| ||||| Sbjct 3073528 CAGCTAGAGGACGGGAGGACGTTGAGCGACTACAACATCCAGAAGGAGAGCACCCTGCAC 3073469 Query 40894 CTAGTGTTGCG 40904 | |||||||| Sbjct 3073468 TTGGTGTTGCG 3073458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 |||||||| ||| | |||||||| || ||||| | ||| ||||||||| |||| |||| Sbjct 3073854 GAGGGCATTCCCCCAGACCAGCAGCGTCTCATTTTCGCCGGCAAACAGTTGGAGGACGGC 3073795 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||||||||| |||||||||||| |||| |||| Sbjct 3073794 CGAACCCTTTCCGACTACAATATCCAGAAGGAGTCCACTTTGCA 3073751 >seq4 Length=1296710 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || |||||||| || |||||| |||| ||||| | |||||| | | | | ||||| Sbjct 543303 CTTACGGGCAAGACGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAG 543244 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| ||||| ||||| | |||||||| || ||||||| ||| ||| Sbjct 543243 GCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGC 543184 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| | ||||| |||||||||||||||||||||| | || || Sbjct 543183 AAGCAGCTTGAGGACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTC 543124 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 || || |||||| | |||||||| || || Sbjct 543123 CACCTGGTGTTGAGATTGAGGGGTGGTGG 543095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218865107520