Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq4 93.3 5e-14 >seq1 Length=4122216 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| || || || | | |||||||||||| |||| ||||||||||| || || |||| Sbjct 3073438 CCTACTGACCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGT 3073497 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || || |||| | |||| ||||||||||| || || || |||||||| ||||||| Sbjct 3073498 AGTCGCTCAACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGT 3073557 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128 | | || | | |||||||||| ||| || |||| | | | ||||||| || Sbjct 3073558 CTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACG 3073617 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | || || |||| |||||||| || || || Sbjct 3073618 ACTCAACTTCGAGAGTGATGGTCTTTCCGGT 3073648 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| || | || | ||| |||||| || || ||||| || | Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3074064 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| |||| || ||||| || || ||||| || | |||||||||||| | || Sbjct 3074065 AGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGA 3074124 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||||| || | || | || | ||| | | | |||||||| || || || Sbjct 3074125 ATACCCTCTTTGTCC-TGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGAC 3074183 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| |||||||||||||| || || ||||| || ||||| |||||| Sbjct 3074184 TTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 43003 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 43062 || |||| || | ||||| || | || || | |||||||||||||| || | ||||| Sbjct 3074328 TACTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCT 3074387 Query 43063 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTG 43121 ||||||| | || | | |||||||||| ||| | || | |||| | | | ||| Sbjct 3074388 GCTGGTCTGGTGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCAATGGTG 3074446 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 ||| ||| || || |||| ||||| || ||||| || || || || || ||||| ||| Sbjct 3074447 TCGGACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGC 3074506 Query 43182 AT 43183 || Sbjct 3074507 AT 3074508 >seq4 Length=1296710 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || || | |||||||| || | || |||||| || || ||||| || | Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| |||| || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| ||| || |||| | | | |||||| ||| || || Sbjct 543218 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACT 543277 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAG 43162 |||| ||||| || |||||||| || Sbjct 543278 TCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817228318560