Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 122 6e-23 seq4 107 1e-18 >seq1 Length=4122216 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || ||||| | ||| || ||||| |||||||||||||| ||| || |||| Sbjct 3074019 CAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCGTC 3074078 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||| ||||| |||||||| | ||||||||||| ||| | | ||| ||||| Sbjct 3074079 TTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTGTC 3074138 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||| || ||||| | | | | || | ||| | || ||||| || | ||||||| Sbjct 3074139 CTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGG 3074197 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||||| || ||||| ||||||||||| Sbjct 3074198 TTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 |||||||||| || ||| | || ||||| ||||| || |||||||| | ||||||| Sbjct 3074331 TGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCT 3074390 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 |||| || | | ||||||||| ||||| ||| | || | | || | |||| Sbjct 3074391 GGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGG 3074450 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || || | ||||| || |||||||| |||||||| || ||||||||||| Sbjct 3074451 ACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Score = 98.7 bits (108), Expect = 6e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| ||||| || ||||| || ||||||||||| Sbjct 3073727 CCACCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATATTGTAGTCGGAA 3073786 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||||||| ||||| ||||||||||| ||||||||||| ||| Sbjct 3073787 AGGGTTCGGCCGTCCTCCAACTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGGGA 3073846 Query 34283 ACGCTCTCC 34291 | || |||| Sbjct 3073847 ATGCCCTCC 3073855 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | || || || ||||| |||||||||||| | Sbjct 3073446 CCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3073505 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | |||| || | |||||| || || || ||||| || |||||||| ||| Sbjct 3073506 AACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGG 3073565 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | |||| |||| ||| || || Sbjct 3073566 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACT 3073625 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| || ||||| Sbjct 3073626 TCGAGAGTGATGGTCTTTCCGGT 3073648 >seq4 Length=1296710 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 |||| ||||||||| | ||| || ||||| |||||||||||||| || | | || Sbjct 543110 CTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCCG 543169 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | ||||||||| ||||| ||||||||||||||||| || | | ||||||| Sbjct 543170 TCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTTG 543229 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | || | | || | |||| ||| ||||| || | ||||| Sbjct 543230 TCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGATC 543289 Query 34355 GTTTTGCCGGTGAG 34368 || ||||| || || Sbjct 543290 GTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071795253120