Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq4 102 6e-17 >seq1 Length=4122216 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||||| | || | ||| || || ||||||||| |||||||||||| Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3074064 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || || ||||| |||||||| ||||| ||||| ||||| || || Sbjct 3074065 AGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGA 3074124 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288 | |||||| |||||| | | || |||| | || | | | | |||| | ||| || Sbjct 3074125 ATACCCTCTTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGAC 3074183 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || ||||| || || |||||||| ||||| ||||| Sbjct 3074184 TTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||||||||| |||||||||||||| |||||||||||| ||| | |||| Sbjct 3073461 AACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCCGTCC 3073520 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| || || | || || ||||| || || | ||||||||||||| Sbjct 3073521 TCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTTGTCC 3073580 >seq4 Length=1296710 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||||||| || |||| ||| || || ||||||||| |||||||||||| Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| || || || || |||||||| || | |||||| ||||| ||||| Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | | |||| ||| || Sbjct 543218 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACT 543277 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAG 45315 || | ||| |||||||||||||| || Sbjct 543278 TCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074949621092