Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 309 3e-79 seq1 143 2e-29 seq4 95.1 1e-14 >seq9 Length=941136 Score = 309 bits (342), Expect = 3e-79 Identities = 939/1437 (65%), Gaps = 26/1437 (2%) Strand=Plus/Plus Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || || || || |||||||| | || ||||| || | | || ||| | || ||| Sbjct 164277 ACGACCTGGAAGTCGCCGGAGAGCACTCGGCGGGCATACAGCATCGACGTGTAGGGCTCG 164336 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || | || || || || ||||| | || || ||||| ||||| || || | || Sbjct 164337 AAGCACTCGTTCCAGCCTAGAATCTGGGATGTGGAGGCGGTAGGCATGGGAGCGACAAGA 164396 Query 22577 AGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACA 22634 || ||||||| | ||||||| |||| | ||| ||| | ||||||||||| | Sbjct 164397 AGGGAGTTTCGTACACCGTGCTCCTTGATCTGGG-CTCG-GAGGGTGGACCAGTCCCAAA 164454 Query 22635 GATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGG 22692 |||||| || ||| | |||| | ||| |||| | ||| ||||| | || Sbjct 164455 GATCGGTGGGG---ACACGGCCCCAGAGGTCGAATTGGAGTTTGCCCTGCGACATG--GG 164509 Query 22693 GCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAA 22752 | || ||||| || |||||| || | ||| | ||||| |||||| | Sbjct 164510 GGAACCCTCGTATGTCTCGTACTTGCCGAGCTCCTGGGCCATCTCGCACGACGCCTCGAG 164569 Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTC 22812 ||| ||| || || ||||||||||| | |||| | |||| |||||| ||| Sbjct 164570 GGCGGCGTGGTAGATTGTCTCGAAGATCTGGATGTTGAGTTCGCGAGCGGCGGGAGATTC 164629 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | | ||||| || | || ||| || || || | |||||| || || | ||||| || Sbjct 164630 GAAGGGCATGCGGAGAGCCATGAAGGCATCGGCGAGACCCTGGACACCGAGACCGACGGG 164689 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 |||| || || || | |||||| | ||||| | || | ||| | Sbjct 164690 GCGGTGGCGCATGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTTCGAGAGAT-GA 164748 Query 22933 TCTGTTC-AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 ||| || ||||| |||| || | || || || | |||||||| | Sbjct 164749 CCTGGTCCAAGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGA 164808 Query 22992 CGCCCGATTGTACA-----ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 | ||| || | || || || | || ||||| ||||||||||| || || || Sbjct 164809 C--CCGCTTCTCCATGTCGACGAAAGCGGGGAGGGCGAGGGAGGCAAGATTACAGACAGC 164866 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||||| | | |||||| | ||| |||||||| || ||| | || ||||| Sbjct 164867 AACCTCGTCAGGCGCAGAGTACTCGATAATCTCGGTACAAAGGTTGGAGGATTTAATCGT 164926 Query 23107 GCCCAAATTGCTCTGGTT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 || | || |||||| | ||| || | ||| | ||||||||||||||| | || Sbjct 164927 ACCGAGATGTTGCTGGTTCGATTTGGCGTTCGCA-GCGTCCTTGTAGAGCATGAAGGGAC 164985 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 ||| |||||| ||| | ||||| ||| || ||| | ||||||| | | ||| Sbjct 164986 CGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAACCAGAGCTTCTGAGCTTTGATG-GTC 165044 Query 23226 GCACGTACCTGCCTT-CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT-A 23283 || ||| || | | ||||||| | ||||| ||| || || | | || | Sbjct 165045 TTTCGCCCCTTCCCAGCCTTCTCGTACGACTCGTACAGCGCCTCGAACTTCTCCGAGTGA 165104 Query 23284 ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTC 23343 ||| ||||| || ||||| | | ||||||||||| |||| ||| || Sbjct 165105 ACA-TCGGCGAGACCGGGGCACTCTGCGGGACACATGAGGGTCCAGTCACCGTCCGACTC 165163 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 || || |||| || || || | ||||| || ||||||||||| || || || || || Sbjct 165164 GACACGCTTCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAACAGGTCCCGAGCACGGAC 165223 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 ||| ||||| ||| |||||| |||| || | || || || | ||| || ||||| || Sbjct 165224 CTCTTCTTTACCGTGGTTCTTCCTCAAGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGG 165283 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 ||||||||| | ||| ||||| ||||||| ||| || || || || ||||| || || || Sbjct 165284 CTCGAGGTAGATGGCGAACGCACCCGGTCGCTTGTTTCCACCTTGGTCGACATATCGCGC 165343 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 |||| || | | | ||||| || |||| |||||| || ||| || || Sbjct 165344 CGTGGCGTCAAAGGCGCGGAGCATGGGAACGATACCGTTCGAGTAACCGTTGGTACCGGC 165403 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | | ||| || || || || |||||||| | ||||| || || |||||| | | || Sbjct 165404 AATATACGAGCCCTTAGCGCGGACGTTGTGGATGTGGAGTCCGATTCCTCCGGCAGTCTT 165463 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || ||| |||||| || || || |||||||| ||||| || ||| || || | Sbjct 165464 GGAGATCTGCGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTCAATCGAGTCGTCCTTCAT 165523 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 ||||| | ||| || || |||||||| | ||||| ||| |||| ||| || || || Sbjct 165524 GGCGACAAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGG 165583 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 | |||||| || ||||||| | ||||| |||||||| || || ||| | ||||| Sbjct 165584 GGAGGCGTGGGTGAAGTATCGCTCAGACATGAGATTGTAAGTCTCAATGACCTTGTCAAT 165643 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || | ||||| ||||||| ||| || ||||| ||||||| || || | ||||| Sbjct 165644 GTTGGCACCGTGGATACCGACGGCAACACGCATGATCATGTGCTGGGGACGTTCGAC 165700 >seq1 Length=4122216 Score = 143 bits (158), Expect = 2e-29 Identities = 184/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 57886 ACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAA 57945 |||| ||||| || || ||| ||| |||||||| || ||| | | || ||||| | Sbjct 3090178 ACGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATTA 3090237 Query 57946 AAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATAT 58005 | || | | |||| ||||||||| | || ||||| || ||||||||||| ||||| | Sbjct 3090238 CAGACGAGAAGTCCACCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTCGAGGGTATCT 3090297 Query 58006 TCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 |||| || ||| ||| || | || || ||| | ||||| || || || |||||||| | Sbjct 3090298 TCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGTC 3090357 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | || || ||||||| | || || || || ||||||||||| || || ||||| |||| Sbjct 3090358 TCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCC 3090417 Query 58126 TAATGTACTCTCAC 58139 | | | ||| ||| Sbjct 3090418 TCCTCTTCTCCCAC 3090431 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || |||||||| |||||| |||| || || | | Sbjct 3074231 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAGC 3074172 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | || | ||| | |||||| || || | || || ||||| Sbjct 3074171 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAAGAGGGTATTCCCCCAGACCA 3074113 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||||||| | |||||| || | ||| || || Sbjct 3074112 GCAGCGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACAA 3074053 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || ||||| || || || || ||||||| |||| Sbjct 3074052 CATCCAGAAGGAGTCTACACTTCACCTCGTTCTGCGATTGAGGGGAGGTA 3074003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||||| || ||||| || |||||| |||| ||||| ||||| Sbjct 3074508 ATGCAGATCTTCGTCAAAACTCTTACCGGCAAGACAATCACCCTCGAAGTTGAGTCGTCC 3074449 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| || | || || |||||| Sbjct 3074448 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 3074389 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || |||||||| || || ||||| || Sbjct 3074388 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGA 3074354 >seq4 Length=1296710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| ||||||||| |||| || || ||||||||| | || | ||||| Sbjct 543303 CTTACGGGCAAGACGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAG 543244 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| || | || || ||||||||||| || || ||||| ||| Sbjct 543243 GCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGC 543184 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| | ||| | ||| || ||||| || || || || || || Sbjct 543183 AAGCAGCTTGAGGACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTC 543124 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| | ||| ||||||| ||| Sbjct 543123 CACCTGGTGTTGAGATTGAGGGGTGGT 543097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766110251840