Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=4122216 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| ||||| | || || |||| || | ||||||||||| || Sbjct 3074040 CTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAA 3074099 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | || | ||| ||||| || |||| |||| || | Sbjct 3074100 AATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTT 3074159 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||||| | |||||| || | || || ||||| ||||| || || ||||| Sbjct 3074160 GTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCAC 3074219 Query 43098 AAAAATTTGCATT 43110 || || |||||| Sbjct 3074220 GAAGATCTGCATT 3074232 Score = 82.4 bits (90), Expect = 6e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 42932 TGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTT 42991 |||| ||||| | || || | || |||||||| || || || |||||||||||||| | Sbjct 3074331 TGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCT 3074390 Query 42992 GATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 | || | || | ||| || || || ||| ||| | | ||||| || ||| |||||| Sbjct 3074391 GGTCTGGTGGGATACCCTCCTTGTC-CTGAATCTTCGCCTTGACATTGTCAATGGTGTCG 3074449 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||| || || | || || || || ||||| |||||||| || || || ||||| Sbjct 3074450 GACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369358307016