Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 123 4e-23 seq9 109 8e-19 >seq1 Length=4122216 Score = 123 bits (136), Expect = 4e-23 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 |||||| |||| |||||||| | || | || || ||||| | |||| | | | Sbjct 3090171 CTCTTTGACGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAG 3090230 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| ||||| ||||| | | |||||| | || | || || |||||||| ||| Sbjct 3090231 TGGATTACAGACGAGAAGTCCACCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTCGAG 3090290 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| || || || || ||||||| |||||||||||||| ||||||||| Sbjct 3090291 GGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTCATG 3090350 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 ||||| || || | |||||| | || || || || ||||| || ||| |||||| Sbjct 3090351 CCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTT 3090410 Query 125571 GCC 125573 ||| Sbjct 3090411 GCC 3090413 >seq9 Length=941136 Score = 109 bits (120), Expect = 8e-19 Identities = 311/466 (67%), Gaps = 14/466 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 165328 CAAGGTGGAAACAAGCGACCGGGTGCGTTCGCCATCTACCTCGAGCCCTGGCACGCCGAC 165269 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || || || |||| || | || ||| || ||||||| || || ||||| Sbjct 165268 ATCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGTAAAGAAGAGGTCCGTGCTCGGGAC 165209 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGC 97052 |||| || || |||||| | | || | ||||||||||| ||| | ||||||| Sbjct 165208 CTGTTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCGGACGGTG-- 165151 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAG-A 97111 |||||| ||| ||||| |||| || |||||||| |||| || | || || | Sbjct 165150 -ACTGGACCCTCATGTGTCCCGCAGAGTGCCCCGGTCTCGCCGA-TGTTCACTCGGAGAA 165093 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAG-AGGGCCGATACGTGAGACGAGTCGATG 97170 ||| ||||| |||| | | |||||| | | ||| | || |||| | || | | Sbjct 165092 GTTCGAGGCGCTGTACGAGTCGTACGAGAAGGCTGGGAAGGGGCGAAAGACCA-TCAAAG 165034 Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | | |||| || ||| |||||| | ||||||| |||||||| ||| | ||| Sbjct 165033 CTC-AGAAGCTCTGGTTCGCCATCCTCGAGGCTCAGACCGAGACTGGCGGTCCCTTCATG 164975 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGG 97288 ||||||||||| | | ||| ||| | | | ||||| | || | || || || || Sbjct 164974 CTCTACAAGGACGCTGCGAA-CGCCAAATCGAACCAGCAACATCTCGGTACGATTAAATC 164916 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||||| || || || || ||| | |||||| | | || |||||| Sbjct 164915 CTCCAACCTTTGTACCGAGATTATCGAGTACTCTGCGCCTGACGAG 164870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058718311520