Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 >seq1 Length=4122216 Score = 122 bits (134), Expect = 8e-23 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||||||||| || | ||| | ||||| ||||| || | ||| || ||| Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGG-- 3074062 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | || || |||||||| ||| | || || |||| ||||| ||||| | Sbjct 3074063 AAAGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGG 3074122 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TC 94956 ||||||| |||||||| | || || || || ||| | ||| ||||| || ||| || Sbjct 3074123 GAATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTC-GC-TGGACTC 3074180 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||||||||| || || || || ||||| ||||||||||| Sbjct 3074181 GACTTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||||| || ||||| || | ||| || ||||||| || | Sbjct 3073458 CGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCCG 3073517 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | || |||||| ||||| || ||||| || ||| Sbjct 3073518 TCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTTG 3073577 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | ||| ||||| | || || || | |||||| Sbjct 3073578 TCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACTTCGAGAGTGATG 3073637 Query 94973 GTTTTTCCAGT 94983 || ||||| || Sbjct 3073638 GTCTTTCCGGT 3073648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || || || | || || |||| ||||| ||||| || ||||| || || Sbjct 3074353 ATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTT 3074412 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | | | ||||| | || || || | ||||| Sbjct 3074413 GTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGGACGACTCAACTTCGAGGGTGAT 3074472 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| || ||||||||||| Sbjct 3074473 TGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290908610720