Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 343 4e-89 seq1 104 6e-17 >seq9 Length=941136 Score = 343 bits (380), Expect = 4e-89 Identities = 1082/1661 (65%), Gaps = 28/1661 (2%) Strand=Plus/Minus Query 363414 ATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCG 363473 ||||||||| ||| |||| ||| | || || ||||| || ||||| ||| | ||||| Sbjct 165731 ATCCTACCTCCTTCGCGTCAACGGTAAAATCGTCGAACGTCCCCAGCACATGATCATGCG 165672 Query 363474 TGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCT 363533 |||||| | |||||||| | | | |||| | ||||| || || || || | Sbjct 165671 TGTTGCCGTCGGTATCCACGGTGCCAACATTGACAAGGTCATTGAGACTTACAATCTCAT 165612 Query 363534 AAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCC 363593 || || ||||| |||||| | || || | | ||| || || || | || || Sbjct 165611 GTCTGAGCGATACTTCACCCACGCCTCCCCTACCCTCTTCAACGCCGGTACCCCCAACCC 165552 Query 363594 ACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGA 363653 || ||||| || ||||| ||| | ||||||||||| || || ||||| |||| || Sbjct 165551 CCAAATGTCATCCTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGAGGGGATCTACGA 165492 Query 363654 CACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCA 363713 || || |||| || || | || ||||||| ||| || ||||| || | ||||| Sbjct 165491 GACCCTCAAGACCTGCGCGCAGATCTCCAAGACTGCCGGAGGAATCGGACTCCACATCCA 165432 Query 363714 CAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGT 363773 ||| || || || || | || ||| ||| || || |||||||| || | || Sbjct 165431 CAACGTCCGCGCTAAGGGCTCGTATATTGCCGGTACCAACGGTTACTCGAACGGTATCGT 165372 Query 363774 TCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCG 363833 ||||||||| || | |||||| || ||| | || |||||||| |||||| ||||| Sbjct 165371 TCCCATGCTCCGCGCCTTTGACGCCACGGCGCGATATGTCGACCAAGGTGGAAACAAGCG 165312 Query 363834 CAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGA 363893 || ||||| || || || |||||||| || ||||| || || ||||| || || Sbjct 165311 ACCGGGTGCGTTCGCCATCTACCTCGAGCCCTGGCACGCCGACATCTTCGAGTTCCTCGA 165252 Query 363894 GCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTG 363953 | |||| ||| || ||||| || | ||||| || || |||||||| || || || Sbjct 165251 CTTGAGGAAGAACCACGGTAAAGAAGAGGTCCGTGCTCGGGACCTGTTCTACGCCCTCTG 165192 Query 363954 GGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG-CC 364012 | | || |||| || |||||||| || ||| | | | ||| | ||| | || || Sbjct 165191 GATCTCCGACCTCTTCATGAAGCGTGTCGAGTCGGACGGTGACTGGACCCTCATGTGTCC 165132 Query 364013 CACACGAATGTCCAGGTCTTTCCGATGT--ATGGGGTGACGACTATGTTGCTCTATACGA 364070 | || || || || ||||| ||||||| | || || | | | || || ||||| Sbjct 165131 CGCA-GAGTGCCCCGGTCTCGCCGATGTTCACTCGGAGA--AGTTCGAGGCGCTGTACGA 165075 Query 364071 AAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGC 364130 ||| || || || |||| || ||||| || || |||||||| ||||| || Sbjct 165074 GTCGTACGAGAAGGCTGGGAAGGGGCGAAAGACCATCAAAGCTCAGAAGCTCTGGTTCGC 165015 Query 364131 CATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC-A 364189 |||| | || | |||| ||||| || |||| ||| | ||||| || | ||| | Sbjct 165014 CATCCTCGAGGCTCAGACCGAGACTGGCGGTCCCTTCATGCTCTACAAGGACGC-TGCGA 164956 Query 364190 ACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGA 364249 || ||| || |||||||| || || ||||| ||| | |||||| |||||||||| Sbjct 164955 ACGCCAAATCGAACCAGCAACATCTCGGTACGATTAAATCCTCCAACCTTTGTACCGAGA 164896 Query 364250 TTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTC 364309 |||| || ||| | || || |||||| ||| || ||||| ||||| || |||| || | Sbjct 164895 TTATCGAGTACTCTGCGCCTGACGAGGTTGCTGTCTGTAATCTTGCCTCCCTCGCCCTCC 164836 Query 364310 CGGCGTT--------TGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAAC 364361 | || || || | ||| ||| | ||| | || | || | || | || Sbjct 164835 CCGCTTTCGTCGACATGGAGAAGCGGGT--CTACGACTTCAAGAAGCTCCACGAGATCAC 164778 Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421 | | || || | ||| |||| ||| || || ||||| | || Sbjct 164777 AAAGGTCGTCACCAAGAACTTGGACCAGGTCATCTCTCGAAACTACTATCCCGTCATCGA 164718 Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 || || || || ||||| || ||||| | ||||| ||||| ||||| ||||| || Sbjct 164717 GGCGCAGAACTCCAACATGCGCCACCGCCCCGTCGGTCTCGGTGTCCAGGGTCTCGCCGA 164658 Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541 | || ||| ||| ||| | || || || || | |||||| | || || | | Sbjct 164657 TGCCTTCATGGCTCTCCGCATGCCCTTCGAATCTCCCGCCGCTCGCGAACTCAACATCCA 164598 Query 364542 GATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAA 364601 |||||| || ||||| || ||||| | || ||||| || |||| | Sbjct 164597 GATCTTCGAGACAATCTACCACGCCGCCCTCGAGGCGTCGTGCGAGATGGCCCAGGAGCT 164538 Query 364602 GGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCT 364661 || |||||| || || ||||| ||||| | |||||||| ||| |||| || || || Sbjct 164537 CGGCAAGTACGAGACATACGAGGGTTCCCCCATGTCGCAGGGCAAACTCCAATTCGACCT 164478 Query 364662 AT-GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGA 364720 | || || | ||| | | | ||| ||||| || || || || | | ||| Sbjct 164477 CTGGGGCCGTGTCCCCA-CCGATCTTTGGGACTGGTCCACCCTCCGAGCCCAGATCAAGG 164419 Query 364721 AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGA 364780 |||| ||| || |||||||| || || |||||||| || || || || | |||| Sbjct 164418 AGCACGGTGTACGAAACTCCCTTCTTGTCGCTCCCATGCCTACCGCCTCCACATCCCAGA 164359 Query 364781 TCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG-CAAT-CTTTATTCACGCCGGGT 364838 | || || |||||||||||||| || |||| | | || || ||| | ||||| || Sbjct 164358 TTCTAGGCTGGAACGAGTGCTTCGAGCC--CTACACGTCGATGCTGTATGCCCGCCGAGT 164301 Query 364839 TCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGG 364898 || ||||| || || | ||| || | || | |||||| | || || Sbjct 164300 GCTCTCCGGCGACTTCCAGGTCGTCTGCCCCTGGCTCCTTCGGGATCTGATCAACTTGGG 164241 Query 364899 GCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT 364958 || |||| || | |||||||||| ||||| |||||| ||||| | || ||||| Sbjct 164240 TCTATGGGACGATAACATGAAGAACCTCATCATTGCCGCTGGCGGTTCCATCCAAAACAT 164181 Query 364959 TCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG 365018 ||| | || | || |||||| | || ||||| || || ||||| | || | | Sbjct 164180 TCCTTCCATCCCCGCCGACCTGAAGTCCATCTACAAGACGGTCTGGGAGA--TCAGTCAG 164123 Query 365019 AA--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTAT 365057 || | ||||||| |||| || || || | ||| ||||| Sbjct 164122 AAGGCAGTCATTGACTTGGCTGCTGACCGTGCTGCATTTAT 164082 >seq1 Length=4122216 Score = 104 bits (114), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 22419 CACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-AC 22477 |||||| | | || ||||| ||||| || ||||||||||| ||||| | | || | Sbjct 3090188 CACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATTACAGACGAGAA 3090247 Query 22478 GTTCA--TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG 22535 || || ||||| || || || || || ||||| | || || || || ||||| || || Sbjct 3090248 GTCCACCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGG 3090307 Query 22536 AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTC 22595 | || | ||||| ||||| || || |||| | | ||||| ||||| || || || Sbjct 3090308 CTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGTCTCACCTTCTC 3090367 Query 22596 AAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||| | || ||| ||||||||||| || ||||| ||||| || Sbjct 3090368 CAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTG 3090415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352731640664