Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq4 91.5 1e-13 >seq1 Length=4122216 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || ||| | || ||| ||||||||||| ||| Sbjct 3074232 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAG 3074173 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| |||||||| || || || || || || Sbjct 3074172 CGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCA 3074113 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| || |||||| || |||||||| | ||| | ||| || || Sbjct 3074112 GCAGCGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACAA 3074053 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || |||||| |||| | || | ||||||| ||||| Sbjct 3074052 CATCCAGAAGGAGTCTACACTTCACCTCGTTCTGCGATTGAGGGGAGG 3074005 >seq4 Length=1296710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| ||||||||||| | ||||||||| || | ||||| ||||| | Sbjct 543290 CGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAGGCCAAGATCCAGG 543231 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || || || ||||| || || ||| | || || | || ||||||||| || || | Sbjct 543230 ACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTTGAGG 543171 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAA 24204 | | ||| | | | ||| || ||||| || || || ||||| | || | ||||| | Sbjct 543170 ACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTGGTGTTGA 543111 Query 24205 GATTGAGAGGAGG 24217 ||||||| || || Sbjct 543110 GATTGAGGGGTGG 543098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935727528060