Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq4 102 8e-17 >seq1 Length=4122216 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| ||||| || | || | || |||||||| || |||||||| ||| Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3074064 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||| || ||||| ||||| ||| | || || ||||||||||| || || Sbjct 3074065 AGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGA 3074124 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| || |||| | | | || | || ||| ||||||||| Sbjct 3074125 ATACCCTCTTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGAC 3074183 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | |||||| ||||| || || || ||||| |||||||| Sbjct 3074184 TTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | ||| |||||| || |||||||| |||||| Sbjct 3073446 CCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3073505 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | ||||||||||||||| || || |||| | || |||||||| || ||| Sbjct 3073506 AACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGG 3073565 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || |||| ||||| | Sbjct 3073566 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACT 3073625 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 3073626 TCGAGAGTGATGGTCTTTCCGGT 3073648 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-CGACTTTCGCCGAGCG 46157 ||||| ||||||||||| |||||||||| | ||| | | | || ||||||||||| Sbjct 3090207 AAGAAGGCCGACTGGGCGCTGAAGTGGATTA-CAGACGAGAAGTCCACCTTCGCCGAGCG 3090265 Query 46158 TATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTT 46217 | | |||||||| || ||||| |||| || || ||| || ||| ||||||| Sbjct 3090266 CCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTT 3090325 Query 46218 TTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGC 46276 | |||| || | || | |||||||||| || || || ||||||||| || || | Sbjct 3090326 CTGGCTCAAGAAGCGTGGAC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCC 3090384 Query 46277 GCGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 | || ||||| || || || |||||||| || ||| Sbjct 3090385 GTGATGAGGGTCTCCACACCGACTTTGCCTGCCTC 3090419 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 131057 TGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCT 131116 ||||||| || ||| || |||||| | ||||||||| ||| |||| || ||||||| Sbjct 3074925 TGTAATCAGACAAGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGCT 3074984 Query 131117 GGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGG 131176 |||| || ||||| || || ||||| ||| || ||||| | || | || || | Sbjct 3074985 GGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCG 3075044 Query 131177 TGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 |||||||| |||| ||||| ||| || ||||| || || || || Sbjct 3075045 AGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTAAGGGTCTTGAC 3075090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| | ||||| || ||| | || || ||||||||||| || ||||| || || ||| Sbjct 3074354 TCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTG 3074413 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || || ||| ||||| | || | || |||| ||||| | |||| ||| | Sbjct 3074414 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGGACGACTCAACTTCGAGGGTGATT 3074473 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| |||||||| ||||| |||||||| Sbjct 3074474 GTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 >seq4 Length=1296710 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || ||| | || | ||| |||||||| || |||||||| ||| Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| ||| |||| | ||||||||||| |||||| Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 543218 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACT 543277 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | || || || || || Sbjct 543278 TCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012493191680