Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq4 102 7e-17 >seq1 Length=4122216 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| ||||| |||| || ||||| || ||| | Sbjct 3074231 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAGC 3074172 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| || || || ||||| ||||||||||| || || || Sbjct 3074171 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAG 3074112 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||||||| | || || || || | ||||| |||||| Sbjct 3074111 CAGCGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACAAC 3074052 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| |||||||| | |||||| Sbjct 3074051 ATCCAGAAGGAGTCTACACTTCACCTCGTTCTGCGATTGAGGGGAGGT 3074004 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | ||||| || || |||| || ||||| || | || Sbjct 3074508 ATGCAGATCTTCGTCAAAACTCTTACCGGCAAGACAATCACCCTCGAAGTTGAGTCGTCC 3074449 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| |||||||||||||| ||||| || || Sbjct 3074448 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 3074389 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || || | || || || || || || || |||||| |||||| | ||||| |||| Sbjct 3074388 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTACA 3074331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || ||||| || || ||||||| ||||| || | |||| || | ||| || |||| Sbjct 3073651 TTGACCGGAAAGACCATCACTCTCGAAGTTGAGTCGTCCGACACGATCGACAATGTCAAG 3073592 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || || |||||||||||||| || || || || ||||| || || |||||||| Sbjct 3073591 GCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAACGACTCATCTTTGCCGGG 3073532 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 || ||| ||||||| | || | ||| |||||||| || || || |||| | Sbjct 3073531 AAGCAGCTAGAGGACGGGAGGACGTTGAGCGACTACAACATCCAGAAGGAGAGCACCCTG 3073472 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| | || || ||| Sbjct 3073471 CACTTGGTGTTGCGTCTCCGTGGTGGT 3073445 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 22317 GGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCA 22376 |||||| ||||| || || || || ||||| || || |||||||||||||| ||||| Sbjct 3073855 GGAGGGCATTCCCCCAGACCAGCAGCGTCTCATTTTCGCCGGCAAACAGTTGGAGGACGG 3073796 Query 22377 CCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| ||| | ||||| ||||| || || || || ||||| | || || || | || | Sbjct 3073795 CCGAACCCTTTCCGACTACAATATCCAGAAGGAGTCCACTTTGCACTTGGTGCTTCGTCT 3073736 Query 22437 GCGCGGAGGT 22446 ||| || ||| Sbjct 3073735 GCGTGGTGGT 3073726 >seq4 Length=1296710 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| || ||||| || | |||| ||| | ||| || |||| Sbjct 543300 ACGGGCAAGACGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAGGCC 543241 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || || || || || || || |||||||| Sbjct 543240 AAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGCAAG 543181 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| | | ||| | ||||| |||||||| || || || || ||| | || Sbjct 543180 CAGCTTGAGGACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 543121 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||| ||||| | || ||| Sbjct 543120 CTGGTGTTGAGATTGAGGGGTGGT 543097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727733997380