Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 111 3e-19 seq1 96.9 7e-15 >seq4 Length=1296710 Score = 111 bits (122), Expect = 3e-19 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| ||||||| || || || |||| |||| ||||| ||||| || || Sbjct 1090714 GGTCCCAACGGTTCGGGTAAATCCACACTTGTCAAGCTCCTCACTGGTGAGACTGAGCCC 1090773 Query 280239 AC--TGAGGGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | |||| |||||||| || || ||| || || | |||||| || |||||| Sbjct 1090774 AACTTGGGTGGTCAAGTTTGGAAACACCCAAACTTGGTCATTGGTTACGTTGCCCAGCAC 1090833 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||||||| ||| || || | ||||||| |||||| Sbjct 1090834 GCTTTCCACCACATCGATAACCACCTCGACTCTACCCCCCTCGAATACATGTTGTGGCGA 1090893 Query 280356 TA 280357 || Sbjct 1090894 TA 1090895 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || ||| | || ||||| || | Sbjct 1090231 GGCTCCCTATCCGGTGGATGGAAGATGAAGCTCGCTCTCGCCCGAGCCATCCTCTTCAAG 1090290 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || ||| |||| || || || ||||| ||||||||| ||||| |||||| | |||| Sbjct 1090291 GCGGATATCCTCCTCCTCGACGAGCCCACCAACCACTTGGACGTGCTCAACGTCGACTGG 1090350 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 | | |||||| || || | | | | ||| |||||||||| |||||||| Sbjct 1090351 TTGATCAACTACCTCACATCCCTTACCACCTGTACCTCCATCATTGTCTCGCACGACTCG 1090410 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 1090411 GACTTCCT 1090418 >seq1 Length=4122216 Score = 96.9 bits (106), Expect = 7e-15 Identities = 200/297 (67%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| |||||||| || || ||||| ||||||||| | || || ||||| | || Sbjct 3090401 GTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGTCC 3090342 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| | | ||||| || ||||| | | ||||||||| Sbjct 3090341 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGC 3090282 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGC 252020 | | || | |||||||| || || ||||| || | | | ||||| | || Sbjct 3090281 GGCAAAGGCGATGAGGCGCTCGGCGAAGGTGGACTTCTCGTCTGTAATCCACTTCAGCGC 3090222 Query 252021 CCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCG 252080 ||| | |||||||| | |||||| || ||||| || |||||||| || |||| Sbjct 3090221 CCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCGTCAAAGAGGTAGGTCCG 3090162 Query 252081 CTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 || ||||| |||| | |||| ||||| ||||| |||| || ||||| Sbjct 3090161 GCGAGCGGGGTCCTTGATGTAGGTGTCAATAAGGAGGGAGTAGGTCTCGGAGTGGAT 3090105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836115203732