Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 163 5e-35 seq4 132 9e-26 seq7 116 7e-21 >seq1 Length=4122216 Score = 163 bits (180), Expect = 5e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || | ||| || || ||||| || |||||||| || ||||| || || | ||| Sbjct 3074017 CGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCG 3074076 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | ||| || |||||||| || | || || ||||| || ||||| || || ||| Sbjct 3074077 TCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTG 3074136 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGAT 68425 || || ||||| || || ||| ||||||||||| ||| || || ||||| | |||||| Sbjct 3074137 TCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTC-GCTGGACTCGACTTCGAGGGTGAT 3074195 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || ||||||||||| ||||| ||||||||| Sbjct 3074196 GGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 3073446 CCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3073505 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | |||||||| || |||| |||||||||||| || ||||||| ||| ||||| || || Sbjct 3073506 AACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGG 3073565 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||||| ||||| | || || ||| Sbjct 3073566 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACT 3073625 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| ||||| || Sbjct 3073626 TCGAGAGTGATGGTCTTTCCGGT 3073648 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| || | || | || || || |||||||| |||||||| || | || || ||| Sbjct 3074927 TAATCAGACAAGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGCTGG 3074986 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| ||||||||| || |||||||| | Sbjct 3074987 TCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAG 3075046 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || || || || | ||| ||||| || || || ||||||||||| Sbjct 3075047 GACTCGACCTCGAGGGTAATGGTCTTGCCGGTAAGGGTCTTGAC 3075090 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 |||||| ||||| || ||| ||||| ||||||||| || |||||||||||||| || Sbjct 3090401 GTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGTCC 3090342 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 || || |||||||| |||| | ||| || |||||||| | | |||||| ||| Sbjct 3090341 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGC 3090282 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 | |||||| ||||||||| ||||||| Sbjct 3090281 GGCAAAGGCGATGAGGCGCTCGGCGAAGG 3090253 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | || || || | ||||||||||||||| || | | || ||| Sbjct 3074606 TAGTCAGAAAGGGTGCGACCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGG 3074665 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || |||||||| |||||||| || ||||| |||||||| ||||||||||| | Sbjct 3074666 TCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 3074725 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | |||||||| || || || ||| Sbjct 3074726 GACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGG 3074761 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGG 68421 ||| || || ||||| |||||||| ||||||||||| |||| | || || |||| | Sbjct 3073905 CTTATCCTGGATCTTCGCCTTGACATTATCGATGGTGTC-GCTGCTCTCCACCTCCAGAG 3073963 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || |||||||||||||| |||||||| |||||||| Sbjct 3073964 TGATCGTCTTTCCCGTGAGGGTTTTGACGAAAATCTGCAT 3074003 >seq4 Length=1296710 Score = 132 bits (146), Expect = 9e-26 Identities = 215/305 (70%), Gaps = 7/305 (2%) Strand=Plus/Minus Query 225368 ACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACA 225427 ||||| ||| || ||| ||| ||| | | ||||||||| ||| ||| || |||| Sbjct 1090496 ACGAACTCAGTCAAGTTACCGGGGTACCGCTTGAGCTTGAAGTTGTTCAAGTGGAGAAC- 1090438 Query 225428 ATTGCCGAGCACACTGCG-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA 225485 | || | | || | ||||||| | |||||||| || ||||||||||| | ||| Sbjct 1090437 ---GTCGGTGATGGTTCGGTTAAGGAAGTCCGAGTCGTGCGAGACAATGATGGAGGTACA 1090381 Query 225486 CGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGT 225545 || || ||| |||||| |||| | ||| | |||||| ||||||| ||||| Sbjct 1090380 GGTG-GTAAGGGATGTGAGGTAGTTGATCAACCAGTCGACGTTGAGCACGTCCAAGTGGT 1090322 Query 225546 TTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACA 225605 | || || ||||| || || ||||| || || | | ||||||||| || | ||||| | Sbjct 1090321 TGGTGGGCTCGTCGAGGAGGAGGATATCCGCCTTGAAGAGGATGGCTCGGGCGAGAGCGA 1090262 Query 225606 GCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAA 225665 ||||||| ||||| || ||||| ||||||||||| || ||||| || ||||| | Sbjct 1090261 GCTTCATCTTCCATCCACCGGATAGGGAGCCGATGGAGTGCTTCTGCTTGGCCTCGTCGA 1090202 Query 225666 AGCCG 225670 | ||| Sbjct 1090201 AACCG 1090197 Score = 89.7 bits (98), Expect = 9e-13 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||| | | |||||| ||| |||||||| || || ||||||||| Sbjct 1090895 TATCGCCACAACATGTATTCGAGGGGGGTAGAGTCGAGGTGGTTATCGATGTGGTGGAAA 1090836 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC-AGAGC-CCCGAG 225095 || |||||||| ||||| | ||| || ||| || || ||||| || || | ||| || Sbjct 1090835 GCGTGCTGGGCAACGTAACCAATGACCAAGTTTGGGTGTTTCCAAACTTGACCACCCAAG 1090776 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||| || ||||||| ||||| || || | || |||| ||| ||||| Sbjct 1090775 TTGGGCTCAGTCTCACCAGTGAGGAGCTTGACAAGTGTGGATTTACCCGAACCGTTGGGA 1090716 Query 225155 CCAATCACGCCAATCCGGGATGA 225177 || | | | | | |||||||| Sbjct 1090715 CCGAGAATGGCGACTCGGGATGA 1090693 >seq7 Length=1170885 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 |||| ||||| || |||||||| |||||||| || | || || ||||| ||||| || Sbjct 1015519 GTCCGGCCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGTGGGATA 1015460 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||||||| ||||||||||| | || || || || Sbjct 1015459 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCG 1015400 Query 68418 AAGGTGATGGTTTTTCCCGTGAGG 68441 | ||||||||| || ||||| ||| Sbjct 1015399 AGGGTGATGGTCTTGCCCGTAAGG 1015376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621800945440