Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 394 2e-104 seq1 235 1e-56 seq3 93.3 8e-14 >seq9 Length=941136 Score = 394 bits (436), Expect = 2e-104 Identities = 1164/1769 (66%), Gaps = 63/1769 (4%) Strand=Plus/Plus Query 243890 CTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATC 243949 |||||||| | || | || || || || |||| | |||| |||||||| ||| Sbjct 164073 CTCTGGTCAATAAATGCAGCACGGTCAGCAGCCAAGTCAATGACTGCCTTCTGACTGATC 164132 Query 243950 TCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACC 244009 || | ||||||||||||||| ||| |||| |||||| ||||| || | Sbjct 164133 TCCCAGACCGTCTTGTAGATGGACTTCAGGTCGGCGGGGATGGAAGGAATGTTTTGGATG 164192 Query 244010 GAGCC-CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC 244068 || || | | || | |||| || | ||||||||||| ||| || |||||| Sbjct 164193 GAACCGCCAGCGG-CAATGATGAGGTTCTTCATGTTATCGTCCCATAGACCCAAGTTGAT 164251 Query 244069 CAGCGCCTCGACCAGGTGCCTGTTC---ACCACCTGAAACTCTCCCGACAGCACGCGGCG 244125 ||| || ||| ||| ||| | || ||||| || || || || ||||| ||||| Sbjct 164252 CAGATCC-CGA--AGGAGCCAGGGGCAGACGACCTGGAAGTCGCCGGAGAGCACTCGGCG 164308 Query 244126 CTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGT 244185 || || | || ||||||| || ||| | ||| || ||||| | || Sbjct 164309 GGCATACAGCATCGACGTGTAGGGCTCGAAGCACTCGTTCCAGCCTAGAATCTGGGATGT 164368 Query 244186 GCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCG 244245 | || || |||||||| | || || || ||| | || |||||| || ||| | Sbjct 164369 GGAGGCGGTAGGCATGGGAGCGACAAGAAGGGAGTTTCGTACACCGTGCTCCTTGATCTG 164428 Query 244246 GAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACAT 244305 | || ||| | ||||||||| | | | | || | ||||||| | Sbjct 164429 GGCTCGGAGGGTGGACCAGTCCCAAAGATCGGTGGGGACAC---------GGCCCCAGAG 164479 Query 244306 GTCAAACTGCAGCAGCCCCTTGCTGAC--GGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||| || || || |||| || ||| |||| |||||||| ||| ||| ||| Sbjct 164480 GTCGAATTGGAGTTTGCCCT-GC-GACATGGGGGAACCCTCGTATGTCTCGTACTTGCCG 164537 Query 244364 TCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC 244423 |||||||| || || | | ||||||||||||| |||||| |||||||||||| Sbjct 164538 AGCTCCTGGGCCATCTCGCACGACGCCTCGAGGGCGGCGTGGTAGATTGTCTCGAAGATC 164597 Query 244424 ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGA 244481 |||| | ||||| || || | || | |||||| |||| | ||||||| Sbjct 164598 TGGATGTTGAGTTCGCGAGCG--GCGGGAGATTCGAAGGGCATGCGGAGAGCCATGAAGG 164655 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | ||||| || ||||| || |||| |||| ||| | ||| ||| |||||||| | | Sbjct 164656 CATCGGCGAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTCTGCG 164715 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGC 244601 | ||| ||||| || |||| | ||| |||| || | ||| ||||| | Sbjct 164716 CCTCGATGACGGGATAGTAGTTTCGAGAGATGACCTGGTCCAAGTTCTTGGTGACGACCT 164775 Query 244602 GGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCC 244661 || ||| ||| || |||||||| | | | ||| ||| || Sbjct 164776 TTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCC---GCTTCTCC---ATGTCGA--- 164826 Query 244662 TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 | || || |||||||| | ||| || || ||||| || ||||| || | | Sbjct 164827 ---CGAAAGCGGGGAGGGCGAGGGAGGCAAGATTACAGACAGCAACCTCGTCAGGCGCAG 164883 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 ||||| || ||||||||| || ||||| | | || || || || || || || || | Sbjct 164884 AGTACTCGATAATCTCGGTACAAAGGTTGGAGGATTTAATCGTACCGAGATGTTGCTGGT 164943 Query 244782 TGGACTTGGCGTT-GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 | || |||||||| |||| |||||||||||||||||||||| || || |||||| ||| Sbjct 164944 TCGATTTGGCGTTCGCAG-CGTCCTTGTAGAGCATGAAGGGACCGCCAGTCTCGGTCTGA 165002 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 || |||||| | | |||||| | | ||| |||| ||| | || |||| || | Sbjct 165003 GCCTCGAGGATGGCGAACCAGAGCTTCTGAGCTTTGATGGTCTTTCGCCCCTTCCCAGCC 165062 Query 244901 GCCTCGTAGCGGGT-GTACAGGGCCTCGAACTCGGGGCCCCAG---ACCTCGTCTAGGCC 244956 |||||| || | |||||| |||||||||| || || || ||| | || || Sbjct 165063 TTCTCGTA-CGACTCGTACAGCGCCTCGAACT---TCTCCGAGTGAACATCGGCGAGACC 165118 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 ||||||| || || |||||||| |||| || ||| | || ||| | || |||||| Sbjct 165119 GGGGCACTCTGCGGGACACATGAGGGTCCAGTCACCGTCCGACTCGACACGCTTCATGAA 165178 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC-----TGGTCCTCTGCTCGTCCGAG 245071 |||||||| |||||||||||| | ||| ||||||| || ||||| || ||| | Sbjct 165179 GAGGTCGGAGATCCAGAGGGCGTAGAACAGGTCCCGAGCACGGACCTCTTCTTTACCGTG 165238 Query 245072 CCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 ||||||||||| || | || || |||| |||| ||||||||||||| | |||| Sbjct 165239 -----GTTCTTCCTCAAGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAG 165293 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTT 245190 | |||| || || || |||||||| || || ||||| || ||| || | |||| Sbjct 165294 ATGGCGAACGCACCCGGTCGCTTGTTTCCACCTTGGTCGACATATCGCGCCGTG-GCGTC 165352 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||| ||| || | || || || ||||| |||| |||||||| || || || | Sbjct 165353 AAAGGCGCGGAGCATGGGAACGATACCGTTCGAGTAACCGTTGGTACCGGCAATATACGA 165412 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 |||||| | | || |||| |||| | || | ||| ||||| ||||||||| | Sbjct 165413 GCCCTTAGCGCGGACGTTGTGGATGTGGAGTCCGATTCCTCCGGCAGTCTTGGAGATCTG 165472 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 |||||| |||||| ||| || || ||||| || ||| ||||||| || || Sbjct 165473 CGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTCAATCGAGTCGTCCTTCATGGCGACAAG 165532 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 |||||||| |||| ||||| |||||| | | | |||||| || || ||| |||||| Sbjct 165533 GAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTG 165592 Query 245431 GGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGC 245489 ||| ||||| | |||| || | || ||| |||| | | ||| |||||| | | Sbjct 165593 GGTGAAGTATC-GCTCAGACATGAGATTGTAAGTCTCAATGACCTTGTCAATGTTGGCAC 165651 Query 245490 CGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGG-CGTCTCGATGGGTCCCTCG 245548 ||||||| | ||| | ||||| |||||||||| ||| |||| | | || Sbjct 165652 CGTGGATACCGACGGCAACACGCATGATCATGTGCTGGGGACGT-TCGACGATTTTACCG 165710 Query 245549 GGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAG 245608 | || | |||||| |||||||| || ||||| |||||||| ||| ||||| Sbjct 165711 TTGACGCGAAGGAGGTAGGATCGCTCGAGGGTTTTGAAACCAAAGTAGTTGTAAGCAAAG 165770 Query 245609 TCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 ||| || || ||| ||| | |||||| Sbjct 165771 TCGCGGTTGTAGATGATGGCAGAGTCGAG 165799 >seq1 Length=4122216 Score = 235 bits (260), Expect = 1e-56 Identities = 288/381 (76%), Gaps = 13/381 (3%) Strand=Plus/Plus Query 42574 ACACGTACATCCTGGATCCCG-TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 |||| |||||| ||| |||| ||| || | | || || | ||||| || || || Sbjct 3090136 ACACCTACATCAAGGACCCCGCTCGC-CGGACCTACCTCTTTGACGCCATCGACACCATC 3090194 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 |||||||||||||||||||| ||||||||||| || ||||| | || | || | | || Sbjct 3090195 CCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATT-ACAGACGAGAAGTCCAC 3090253 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| |||| | || | |||||| ||||||||||||| ||||||||||| ||| |||| Sbjct 3090254 CTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTT 3090313 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||||||||| || || || |||||||| ||||||||||| |||| Sbjct 3090314 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTC-ATGCCCGGTCTCACCTTCTCCAACG 3090372 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | | || ||||| || || | ||||||||||||||||| ||||| || Sbjct 3090373 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC---CC 3090429 Query 42871 ACCTCAGGCACAAGCCC--TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 ||||| ||| | | || || | || || ||||||| |||||| ||| | Sbjct 3090430 ACCTC-CGCAGACGGCCATGCGCA-GACACCATCAACAAAATCATCAAGGAGGCTGTGAA 3090487 Query 42929 GATCGAGAAGGAGTTCCTCAC 42949 ||||||| |||||||||| || Sbjct 3090488 GATCGAGCAGGAGTTCCTGAC 3090508 >seq3 Length=1461739 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || |||||||||||||||||| |||||||| | ||||| ||| | ||| || || Sbjct 1187630 CGTAGAAGGCATCTTCTTCTCGGGCTCCTTCGCCGCTATCTTTTGGTTGAAGAAG-CGGG 1187688 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 ||| |||||| ||| | || ||||| || || ||||||||| | || |||||| Sbjct 1187689 GTCTGATGCCTGGATTGACATTCTCCAATGAGCTCATCAGCCGAGATGAGGGG 1187741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338586179520