Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 1e-12 seq4 87.8 4e-12 >seq7 Length=1170885 Score = 89.7 bits (98), Expect = 1e-12 Identities = 259/389 (67%), Gaps = 16/389 (4%) Strand=Plus/Minus Query 325366 ACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGC 325425 ||| || || || | |||| ||| | |||||||| ||||||||||| | | ||| || Sbjct 1133409 ACCAAATTGACCATTCGGCGACAGCAGATTGATGTTGTTGCTTCCGACGAAGTTCTGGGC 1133350 Query 325426 AAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGC 325485 || ||||| || |||||| ||||| || || || || ||| | | ||||| Sbjct 1133349 GAGACCAACGATAGTGGTAGTCAGAGACGCTTCACCGTGATGGTACGCGGTCTTCTCTGA 1133290 Query 325486 AACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGA 325545 ||||||||| | ||| || ||||| | || || || ||| ||||||||| Sbjct 1133289 GACGTAACCGACCAGCTGCGCCACCTTGATCTCCTTCTGCAGATTCCGCTTGAAACAACC 1133230 Query 325546 ATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTC 325605 || | |||||||| ||| ||| |||| |||||| | ||||| || || ||| Sbjct 1133229 GTACAAGACTTTCCGCTGACCAGGCTTGAGACCATCGGCCACCGATGGTATCGATCG--- 1133173 Query 325606 CAGATCGTACCGC----GAGAACAAAATAAGTTCCTTGTCGATGAAGTCGGGAA-CGGGA 325660 | || || | || ||||| | || || || || | || |||||||| || ||||| Sbjct 1133172 GACATTGT-CTGCCATGGAGAAGAGGATGAGCTCTTTATTGACGAAGTCGGAAATCGGGA 1133114 Query 325661 --ACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTTCGTA-TGCCGTCATCCACTCC 325717 || || | || ||||| || | || || ||| || || || ||||||| Sbjct 1133113 TGACATC-TACATC--GTGGTTGAGGAAGGTGCCAGGCCTGTACTGTCG-CAGCCACTCC 1133058 Query 325718 TTGCGATCCTCGGCTCGTGACTTGTTGAA 325746 |||||||| || ||| | ||||||||| Sbjct 1133057 TTGCGATCATCCGCTTTTTTCTTGTTGAA 1133029 >seq4 Length=1296710 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || | ||||| || | || || || |||||| Sbjct 543134 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAG 543193 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || ||||| || ||||| ||| || || || |||||||| || || || || Sbjct 543194 ATGAGCCGCTGCTGG---TCTGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 543250 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || | ||| ||| || |||||||| ||||||||||| || || || Sbjct 543251 TTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653614055256