Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq4 95.1 1e-14 >seq1 Length=4122216 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || || |||| || | || | ||| |||||| || || ||||| || | Sbjct 3074004 ACCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 3074063 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || ||| |||| || ||||| || || ||||| || | |||||||||||| | || Sbjct 3074064 AAGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGG 3074123 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||| |||||| || | || | || | ||| | | | |||||||| || || | Sbjct 3074124 AATACCCTCTTTGTCC-TGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGA 3074182 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | |||| |||||||||||||| || || ||||| || ||||| |||||| Sbjct 3074183 CTTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | |||||||||||| |||| ||||||||||| || || ||||| || Sbjct 3073444 GACCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGC 3073503 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 || |||| | |||| ||||||||||| || || || |||||||| |||||||| | | Sbjct 3073504 TCAACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGG 3073563 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | | |||||||||| ||| || |||| | | | ||||||| ||| || | Sbjct 3073564 GGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAA 3073623 Query 42160 CATCGACCGTGATGGTTTTGCCCGT 42184 | |||| |||||||| || || || Sbjct 3073624 CTTCGAGAGTGATGGTCTTTCCGGT 3073648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42028 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 42087 || |||| || | ||||| || | || || | |||||||||||||| || | ||||| Sbjct 3074328 TACTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCT 3074387 Query 42088 GCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTG 42146 ||||||| | ||| | | |||||||||| ||| | || | |||| | | | ||| Sbjct 3074388 GCTGGTCTGGTGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCAATGGTG 3074446 Query 42147 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 ||| ||| || || |||| ||||| || ||||| || || || || || ||||| ||| Sbjct 3074447 TCGGACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGC 3074506 Query 42207 AT 42208 || Sbjct 3074507 AT 3074508 >seq4 Length=1296710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || | |||||||| || | || |||||| || || ||||| || | Sbjct 543097 ACCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 543156 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| |||| || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 543157 AAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGG 543216 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| || |||| | | | |||||| ||| || || Sbjct 543217 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGAC 543276 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAG 42187 |||| ||||| || |||||||| || Sbjct 543277 TTCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212446911680