Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 seq7 96.9 3e-15 seq4 96.9 3e-15 >seq1 Length=4122216 Score = 122 bits (134), Expect = 8e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 ||||||| || | || | |||||||| || || || ||||| ||| | ||| || Sbjct 3074014 AATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGC 3074073 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || |||||||| || ||| | |||||||||||||| || || || || ||||| Sbjct 3074074 CCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCT 3074133 Query 127016 TTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGG 127073 |||||| ||| || |||| | |||| |||| |||||| | ||||||||||| || Sbjct 3074134 TTGTCCTGGATCTT-GGCTTTAACGTTG-TCGATGGTGTCGCTGGACTCGACTTCGAGGG 3074191 Query 127074 TCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | ||||||||||| || || || || || |||||||| Sbjct 3074192 TGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 102 bits (112), Expect = 8e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || | || || |||||| | |||||||||||||| || || || || Sbjct 3074345 GTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATA 3074404 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069 |||||||||||| || ||| ||||| | || | |||||| | ||| |||||| Sbjct 3074405 CCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGGACGACTCAACTTCG 3074464 Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | || |||||||| |||||||| || || |||||||| Sbjct 3074465 AGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | || ||| || || || ||||| |||| | Sbjct 3073446 CCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3073505 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || |||||||| || || || |||| | ||| ||||| || || || Sbjct 3073506 AACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGG 3073565 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||||| | |||| ||||| | ||| ||| Sbjct 3073566 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACT 3073625 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091 |||| || | || || ||||||| Sbjct 3073626 TCGAGAGTGATGGTCTTTCCGGTCA 3073650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 |||||| || || ||||| || || ||| ||||||| |||||||| || ||||| ||| Sbjct 3074618 GTGCGACCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGAGGAATG 3074677 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069 |||||||||||| ||| || ||||| | |||| |||||| | | |||||| || Sbjct 3074678 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCA 3074737 Query 127070 ACGGTCACCGTTTTGCCGGTCAG 127092 | || | || |||||||| || Sbjct 3074738 AGAGTGATGGTCTTGCCGGTAAG 3074760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || || ||| |||||||||||||||| || || || || ||||||||| Sbjct 3074948 TCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATACCCTCCTTG 3075007 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| || | |||||||| |||||| |||| ||| | Sbjct 3075008 TCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCCGAGGACTCGACCTCGAGGGTAAT 3075066 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || |||||||| || || || || Sbjct 3075067 GGTCTTGCCGGTAAGGGTCTTGAC 3075090 >seq7 Length=1170885 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995 |||| |||| || || || ||| || | ||| ||||| ||| | ||||||||||||| Sbjct 1015533 TGTAGTCGCTCAAAGTCCGGCCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCT 1015474 Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCC 127054 | || || || || |||||||||||| ||| || ||||| |||| |||| ||||||| Sbjct 1015473 GGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCC 1015415 Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 | |||||| |||| ||| | || ||||| || || | | |||||| Sbjct 1015414 GAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTAAG-GCTATTACAA 1015367 >seq4 Length=1296710 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||| |||||||| || | |||||||| || || || ||||| ||| Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || ||||| || || ||| |||| | |||||||| || ||||| Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | || | |||||| | ||||||| Sbjct 543218 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACT 543277 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| ||| | ||| ||||| || || Sbjct 543278 TCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500490924480