Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 262 5e-65 seq1 154 2e-32 seq3 96.9 4e-15 >seq9 Length=941136 Score = 262 bits (290), Expect = 5e-65 Identities = 897/1386 (65%), Gaps = 39/1386 (3%) Strand=Plus/Plus Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 |||||| ||||| |||||||| || || | || |||| ||||||||| || ||||| Sbjct 164324 CGTGTAGGGCTCGAAGCACTCGTTCCAGCCTAGAATCTGGGATGTGGAGGCGGTAGGCAT 164383 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||| || | |||||| ||| || | ||| | || | || | | ||||| | Sbjct 164384 GGGAGCGACAAGAAGGGAGTTTCGTACACCGTGCTCCTTGATCTGGGCTCGGAGGGTGGA 164443 Query 116034 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCC-ACATATCAAACTGGAGGATACCTTGGG 116092 |||||| | || | || | | ||| | | || || ||||| | || || | Sbjct 164444 CCAGTCCCAAA-GATCGGTGGGGACACGGCCCCAGAGGTCGAATTGGAGTTTGCCCTGCG 164502 Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 116152 || || || ||||| ||||||| || ||| ||| |||| ||| | || Sbjct 164503 ACATGGGGGAACCCTCGTATGTCTCGTACTTGCCGAGCTCCTGGGCCATCTCGCACGACG 164562 Query 116153 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 116212 |||||||||| ||||| || |||||||| || || | || | | | || || Sbjct 164563 CCTCGAGGGCGGCGTGGTAGATTGTCTCGAAGATCTGGATGTTGAGTTCGCGAGCGGCGG 164622 Query 116213 CGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 116272 || || || | | ||| || || |||| |||||||| ||||||||||| | Sbjct 164623 GAGATTCGAAGGGCATGCGGAGAGCCATGAAGGCATCGGCGAGACCCTGGACACCGAGAC 164682 Query 116273 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAAATTCC 116329 | | ||||| || | ||| || || || | || ||| | ||||||| | || | Sbjct 164683 CGACGGGGCGGTGGCGCATGTTGGAGTTCTGCGC---CTCGATGACGGGATAGTAGTTTC 164739 Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389 | ||| ||| | | || |||||||| ||||||||||| || || ||||| | | Sbjct 164740 GAGAGATGACCTGGTCCAAGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTGA 164799 Query 116390 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 116449 | || | || |||| | ||| | || ||||||| || || ||||||| Sbjct 164800 AGTCGTAGACCCGCTTCTCCATGTCGACGAAAGCGGGGAGGGCGAGGGAGGCAAGATTAC 164859 Query 116450 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 116509 | |||| ||| || ||| |||||| ||||| || ||||| | || || | Sbjct 164860 AGACAGCAACCTCGTCAGGCGCAGAGTACTCGATAATCTCGGTACAAAGGTTGGAGGATT 164919 Query 116510 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATAT 116569 |||| || || | | | || || || || | ||| || |||||||||||||| Sbjct 164920 TAATCGTACCGAGATGTTGCTGGTTCGATTTGGCGTTCGCAGCGTCCTTGTAGAGCATGA 164979 Query 116570 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGC 116628 | || || ||||| || || | || ||| || || ||| | | || | | | | Sbjct 164980 AGGGACCGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAACCAGAGCTTCTGAGCTTTGA 165039 Query 116629 ACAGTGGCGTTGGCTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAAC 116682 ||| || |||||||| ||| ||||||| ||| || ||||| ||| Sbjct 165040 ----TGGTCTT---TCGCCCCTTCCCAGCCTTCTCGTACGACTCGTACAGCGCCTCGAAC 165092 Query 116683 TCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATT 116740 | || || | | | || | ||| || || || | ||||| | ||| | ||| | Sbjct 165093 T--TCTCCGAGTGAACATCGGCGAGACCGGGGCACTCTGCGGGACACATGAGGGTCCAGT 165150 Query 116741 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 116800 ||| || ||| || ||||||||||||||||| | ||||||||| || |||| || | Sbjct 165151 CACCGTCCGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAACAGGT 165210 Query 116801 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 116860 ||||| || | ||||| | || || || | ||| || | || || | ||| | Sbjct 165211 CCCGAGCACGGACCTCTTCTTTACCGTGGTTCTTCCTCAAGTCGAGGAACTCGAAGATGT 165270 Query 116861 CCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC-----CTTGCGACGACCAGCCT 116914 | |||||||| || || ||||| | |||| | |||| |||| | ||| | Sbjct 165271 CGGCGTGCCAGGGCTCGAGGTAGATGGCGAACGCACCCGGTCGCTTGTTTCCACCT---T 165327 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| ||||| | |||||| |||| ||| |||| ||||| |||| |||||| | || | Sbjct 165328 GGTCGACATATCGCGCCGTGGCGTCAAAGGCGCGGAGCATGGGAACGATACCGTTCGAGT 165387 Query 116975 GGCCATTTGTCCCCCGAATA--CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 || || || || |||| |||| | | | || | ||| | ||||||||| | || Sbjct 165388 AACCGTTGGTACCGGCAATATACGAGCCCT--TAGCGCGGACGTTGTGGATGTGGAGTCC 165445 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 || || || || ||| ||||| || ||||| | |||| | |||||||||| || Sbjct 165446 GATTCCTCCGGCAGTCTTGGAGATCTGCGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTC 165505 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 |||||||| |||| | |||| ||||||||| |||||||| || | || ||||| Sbjct 165506 AATCGAGTCGTCCTTCATGGCGACAAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACC 165565 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGT 117212 |||||||||||||| || | |||||| |||| | | ||||| || ||| || Sbjct 165566 GGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTATCGCTCAGACATGAGATTGTAAGT 165625 Query 117213 CTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTA 117272 ||| | ||| | ||||| | ||||| ||||||| | || ||||| | ||||| Sbjct 165626 CTCAATGACCTTGTCAATGTTGGCACCGTGGATACCGACGGCAACACGCATGATCATGTG 165685 Query 117273 TTGGGG 117278 ||||| Sbjct 165686 CTGGGG 165691 >seq1 Length=4122216 Score = 154 bits (170), Expect = 2e-32 Identities = 183/245 (75%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||| |||||||||||||| || || |||||| ||||| Sbjct 3090412 GCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 3090353 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 3090352 GGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATA 3090293 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTAT-CA 127696 ||||| || || || || | || |||||||| |||| ||||| | || | | Sbjct 3090292 CCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAGG---TGGACTTCTCGTCTGTA 3090236 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||||||| |||||| | ||||| |||| ||| || |||| ||| | ||| || ||| Sbjct 3090235 ATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCGTCA 3090176 Query 127757 AAGAG 127761 ||||| Sbjct 3090175 AAGAG 3090171 >seq3 Length=1461739 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || ||| |||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 1187740 CCCTCATCTCGGCTGATGAGCTCATTGGAGAATGTCAATCCAGGCATCAGACCCCGCTTC 1187681 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||| || || || || ||||| ||||||||||| || || || || ||||| Sbjct 1187680 TTCAACCAAAAGATAGCGGCGAAGGAGCCCGAGAAGAAGATGCCTTCTACGCAAGCGAAA 1187621 Query 127658 GCAAATAGACG 127668 || | ||| || Sbjct 1187620 GCGACTAGGCG 1187610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506801220320