Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 122 2e-22 seq1 105 2e-17 seq9 89.7 1e-12 seq7 86.0 1e-11 >seq4 Length=1296710 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || |||||||| || |||||||| |||| ||||||||| | | ||||| || Sbjct 543109 TCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCC 543168 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || || |||||||| |||||||||||||| ||||||||||| ||| || || || Sbjct 543169 GTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTT 543228 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||| || || | |||||| | | || || || | ||||| Sbjct 543229 GTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGAT 543288 Query 199594 CGTCTTACCCGTGAG 199608 |||||| ||||| || Sbjct 543289 CGTCTTGCCCGTAAG 543303 >seq1 Length=4122216 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || ||| || ||||| || || |||||||| |||| ||||||||| | | || | || Sbjct 3074016 TCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCC 3074075 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| ||||| || |||||||| || | ||||||||||| || ||| || ||| Sbjct 3074076 GTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTT 3074135 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| || ||| |||| |||||| | | || || || | ||||| Sbjct 3074136 GTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGAT 3074195 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| || || || Sbjct 3074196 GGTTTTGCCGGTGAGGGTCTTCACGAAGATCTG 3074228 >seq9 Length=941136 Score = 89.7 bits (98), Expect = 1e-12 Identities = 170/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 ||||||||||||| |||||||| ||| ||| | |||||| | | ||| | | Sbjct 164961 GCGTCCTTGTAGAGCATGAAGGGACCGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAAC 165020 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | || ||||| | ||| ||| | | | || | || ||||| ||| || Sbjct 165021 CAGAGCTTCTGAGCTTTGATGGTCTTTCGCCCCTTCCCAGCCTTCTCGTACGACTCGTAC 165080 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTC-GGACAAAA 167946 || | ||||| | || | || || ||| | |||||||| || || | ||||| | Sbjct 165081 AGCGCCTCGAACTTCTCCGAGTGAACATCGGCGAGACCGGG-GCACTCTGCGGGACACAT 165139 Query 167947 GAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 168006 ||| |||| | || || | |||||| | |||||||||||||||||| |||| | || Sbjct 165140 GAGGGTCCAGTCACCGTCCGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGGGC 165199 Query 168007 GTAGAACA 168014 |||||||| Sbjct 165200 GTAGAACA 165207 >seq7 Length=1170885 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| |||||||| ||||| |||| ||||||||||||||| || | ||||||| Sbjct 1015533 TGTAGTCGCTCAAAGTCCGGCCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCT 1015474 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| || || || || ||||| ||||| ||| ||| |||| |||||| | Sbjct 1015473 GGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCG 1015414 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 | || || || | ||||| ||||| ||||| || Sbjct 1015413 AGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTAAG 1015377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920814543484