Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq4 120 3e-22 >seq1 Length=4122216 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| || || || | |||| |||||| ||||| ||||||||||| Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3074064 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| |||| |||||||| ||||||||||| ||||| ||||||||||| | || Sbjct 3074065 AGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGA 3074124 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | ||| |||||| |||||| ||| | ||| | | | |||||||| || || || Sbjct 3074125 ATACCCTCTTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGAC 3074183 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||||||||| || || || || || ||||| |||||| Sbjct 3074184 TTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||| || |||||||| ||||| ||||||||| | || | | | Sbjct 3073457 ACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCC 3073516 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| ||||| || || | || |||||||| | || | | |||||| Sbjct 3073517 GTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTT 3073576 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||||| ||||| | | | ||||||| ||| || || || | ||||| Sbjct 3073577 GTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACTTCGAGAGTGAT 3073636 Query 46558 GGTTTTGCCCGTCA 46571 ||| || || |||| Sbjct 3073637 GGTCTTTCCGGTCA 3073650 Score = 105 bits (116), Expect = 8e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46413 TATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT 46472 || |||||||||| |||||||| | || || | ||||| || ||||| ||||| |||| Sbjct 3074328 TACTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCT 3074387 Query 46473 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGT 46532 ||||||| | || | | |||||||||| |||||| ||||| | | | |||| Sbjct 3074388 GCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT 3074447 Query 46533 CGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 || ||| || || || | ||||| || ||||| || || ||||| || ||||| |||| Sbjct 3074448 CGGACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCA 3074507 Query 46593 T 46593 | Sbjct 3074508 T 3074508 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 46413 TATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT 46472 || ||||||| || || ||||| |||| || |||||||| |||||||| ||||| |||| Sbjct 3074601 TACTGTAGTCAGAAAGGGTGCGACCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCT 3074660 Query 46473 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGT 46532 ||||||| | || | || |||||||||| |||||| ||||| | | | |||| Sbjct 3074661 GCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 3074720 Query 46533 CGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || || || || || | |||||||| ||||| || || Sbjct 3074721 CGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 3074760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| || |||||| ||||||||||||||||| || || || | Sbjct 3073738 ACGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTTCGGCC 3073797 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 ||| || | ||| ||||||||||| || | ||||||||||| | || | || |||| Sbjct 3073798 GTCCTCCAACTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCCTCC 3073855 >seq4 Length=1296710 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || | ||||||||| || | ||| |||||| ||||| ||||||||||| Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || ||||||||||||||||| || | ||||||||||| | || Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| ||||| | | | |||||| ||| || || Sbjct 543218 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACT 543277 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAG 46572 || | ||||| || |||||||| || Sbjct 543278 TCGAGGGTGATCGTCTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238032595040