Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq4 120 3e-22 >seq1 Length=4122216 Score = 176 bits (194), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| ||||||||||||||| |||| |||||| ||| Sbjct 3074232 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAG 3074173 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| |||||| || |||| ||||||||||| |||||| | |||| Sbjct 3074172 CGACACCATCGACAACG-TTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACC 3074114 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| ||| ||||||||||| || |||| ||| || || |||||||| Sbjct 3074113 AGCAGCGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACA 3074054 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || | || ||||| ||||| || || Sbjct 3074053 ACATCCAGAAGGAGTCTACACTTCACCTCGTTCTGCGATTGAGGGGAGG 3074005 Score = 159 bits (176), Expect = 3e-34 Identities = 181/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| || | ||||| || | ||| ||||| |||||| ||| || | Sbjct 3090416 GCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 3090357 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || |||| |||||| ||| || ||||| Sbjct 3090356 ACCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAA 3090297 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGG 133072 || ||||||||||| || || || | ||||||||| |||| |||| ||||| || | Sbjct 3090296 GATACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAGGTGGACTTCTCGTCT-G 3090238 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 ||||| ||||||||| |||||||| | |||| ||| || || || |||||||||| Sbjct 3090237 TAATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCGT 3090178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || |||||||| |||| || ||| | |||||| | | | | || | Sbjct 3073648 ACCGGAAAGACCATCACTCTCGAAGTTGAGTCGTCCGACACGATCGACAATGTCAAGGCG 3073589 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| || || ||||| | || || || Sbjct 3073588 AAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAACGACTCATCTTTGCCGGGAAG 3073529 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCA 38446 ||||| || |||| | | || | | ||||||||||||||| ||||| ||| || ||||| Sbjct 3073528 CAGCTAGAGGACGGGAGGACGTTGAGCGACTACAACATCCAGAAGGAGAGC-ACCCTGCA 3073470 Query 38447 TTTGGTGCTGCGT 38459 |||||| ||||| Sbjct 3073469 CTTGGTGTTGCGT 3073457 >seq4 Length=1296710 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || |||||||| || |||||| |||| |||||| | |||||| | | | | | || Sbjct 543303 CTTACGGGCAAGACGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAG 543244 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| ||||| || || | ||||| ||||||||||| | ||| ||| Sbjct 543243 GCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGC 543184 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| | ||||| ||||||||||||||| ||||| | || || Sbjct 543183 AAGCAGCTTGAGGACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTC 543124 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| || | ||||| || || Sbjct 543123 CACCTGGTGTTGAGATTGAGGGGTGG 543098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172474887680