Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 226 4e-54 seq1 163 4e-35 seq7 111 2e-19 seq3 84.2 3e-11 >seq9 Length=941136 Score = 226 bits (250), Expect = 4e-54 Identities = 937/1457 (64%), Gaps = 41/1457 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || |||||| |||| ||||||||| | |||||||| | | | ||| | | Sbjct 165757 TACTTTGGTTTCAAAACCCTCGAGCGATCCTACCTCCTTCGCGTCAACGGTAAAATCGTC 165698 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 ||| || ||| ||||| ||||||| || || |||||||||| || | | ||||| Sbjct 165697 GAACGTCCCCAGCACATGATCATGCGTGTTGCCGTCGGTATCCACGGTGCCAACATTGAC 165638 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAAC 111724 || | ||||| ||| | ||||| | | || |||| |||||| | || || Sbjct 165637 AAGGTCATTGAGACTTACAATCTCATGTCTGAGCGATAC-TTCACCCACGCCTCCCCTAC 165579 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 |||||||||||| ||||| || | ||||||||||| || |||||| | || | || Sbjct 165578 CCTCTTCAACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTTGTCGCCATGAA 165519 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 ||| || || || | || || |||| || |||| || || || ||||| ||| Sbjct 165518 GGACGACTCGATTGAGGGGATCTACGAGACCCTCAAGACCTGCGCGCAGATCTCCAAGAC 165459 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCG--TATTAGA 111902 || || || ||||| | |||||||| | ||| | || | | | |||| |||| Sbjct 165458 TGCCGGAGGAATCGGACTCCACATCCACAACGTCCGCGCTA--AGGGCTCGTATATTGCC 165401 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| || ||| | || | ||||| |||| ||||| |||| ||| ||||||| ||| Sbjct 165400 GGTACCAACGGTTACTCGAACGGTATCGTTCCCATGCTCCGCGCCTTTGACGCCACGGCG 165341 Query 111963 CGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAG 112016 || ||||| |||||| ||| ||| | ||| | |||| |||| || ||| Sbjct 165340 CGATATGTCGACCAAGGTGGAAACAAGCGAC---CGGGTGCGTTCGCCATCTACCTCGAG 165284 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 || |||||||| || ||| | |||||||| || ||| | ||||| ||| | || ||| Sbjct 165283 CCCTGGCACGCCGACATCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGTAAAGAAGAG 165224 Query 112077 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | | |||| || || || |||| ||| |||||||| | || |||||||||||| | || Sbjct 165223 G-TCCGTGCTCGGGACCTGTTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGT 165165 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG- 112194 ||| | || | ||| | ||| | ||||| | || ||||||||| |||||| Sbjct 165164 CGAGTCGGACGGTGACTGGACCCTCATGTGTCCCGCAGAGTGCCCCGGTCTCGCCGATGT 165105 Query 112195 -CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA----AGAAAGTCGGGC 112249 | | | ||| |||| || || || ||| ||||||| | | ||| |||| Sbjct 165104 TCACTCG--GAGAAGTTCGAGGCGCTGTACGAGTCGTACGAGAAGGCTGGGAAG--GGGC 165049 Query 112250 GACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 112308 || ||| | |||| | || | | ||| || || ||| || |||| ||||||| Sbjct 165048 GA--AAGACCATCAAAGCT-CAGAAGCTCTGGTTCGCCATCCTCGAGGCTCAGACCGAGA 164992 Query 112309 CTGGTACACCATATATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAAGAAT 112367 |||| || | ||||| ||||| ||||| ||| | ||| | || || | || Sbjct 164991 CTGGCGGTCCCTTCATGCTCTACAAGGACGCTGCGAACGCCAAATCG-AACCAGCAACAT 164933 Query 112368 TTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGAT 112427 | ||| ||| || |||||||| ||||| || || | || | | | || Sbjct 164932 CTCGGTACGATTAAATCCTCCAACCTTTGTACCGAGATTATCGAGTACTCTGCGCCTGAC 164873 Query 112428 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA 112487 ||| ||||| ||||| || || || |||| |||||| | || || |||| Sbjct 164872 GAGGTTGCTGTCTGTAATCTTGCCTCCCTCGCCCTCCCCGCTTTCGTCGACATGGAGAAG 164813 Query 112488 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547 | | || | | || |||||||| | || || ||||| || ||| | || Sbjct 164812 CGGGTCTACGACTTCAAGAAGCTCCACGAGATCACAAAGGTCGTCACCAAGAACTTGGAC 164753 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGA 112604 || || | |||| | || |||| | ||| || | || || || ||| | Sbjct 164752 CAGGTCATCTCTCGAAACTACTATCCCGTCATCGAG---GCGCAGAACTCCAACATGCGC 164696 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 ||||| || | |||||||||||||| |||||||| |||| ||||| | ||| Sbjct 164695 CACCGCCCCGTCGGTCTCGGTGTCCAGGGTCTCGCCGATGCCTTCATGGCTCTCCGCATG 164636 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | || || || || || ||| |||| | || || |||||||| || ||| Sbjct 164635 CCCTTCGAATCTCCCGCCGCTCGCGAACTCAACATCCAGATCTTCGAGACAATCTACCAC 164576 Query 112725 GCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCA-TATGAAACCTTTGA 112783 ||||| || |||||| | ||| |||| ||| | | | | | || || || | || Sbjct 164575 GCCGCCCTCGAGGCGTCGTGCGAGATGGCCCAGG-AGCTCGGCAAGTACGAGACATACGA 164517 Query 112784 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT 112843 |||||| || || || || || ||||| || | |||| ||| ||| Sbjct 164516 GGGTTCCCCCATGTCGCAGGGCAAACTCCAATTCGACCTCTGGGGCCGTGTCCCCACCGA 164457 Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 || | |||||| | | ||| | | ||||||||| | ||| | || ||| || Sbjct 164456 TCTTTGGGACTGGTCCACCCTCCGAGCCCAGATCAAGGAGCACGGTGTACGAAACTCCCT 164397 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 | | | || || ||||| || |||||||| | || || | || || || ||||| Sbjct 164396 TCTTGTCGCTCCCATGCCTACCGCCTCCACATCCCAGATTCTAGGCTGGAACGAGTGCTT 164337 Query 112964 TGAACCCTACACGACGA 112980 || ||||||||| ||| Sbjct 164336 CGAGCCCTACACGTCGA 164320 >seq1 Length=4122216 Score = 163 bits (180), Expect = 4e-35 Identities = 185/245 (76%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 |||||||| |||||| | || | || || || | ||||| || || ||||| ||||| Sbjct 3090171 CTCTTTGACGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAG 3090230 Query 102150 TGGTTTG-ATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| || | || | |||| |||| || ||||| ||| |||| ||||| || Sbjct 3090231 TGGATTACAGACGAGAAGTCCA---CCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTC 3090287 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 ||||||||||||||||| || |||||| | | || | |||||||||||||| || ||| Sbjct 3090288 GAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTC 3090347 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 102326 ||||| |||||| ||||||||||||||| ||||| ||||| ||||| |||||| || Sbjct 3090348 ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGAC 3090407 Query 102327 TTTGC 102331 ||||| Sbjct 3090408 TTTGC 3090412 >seq7 Length=1170885 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095 ||||| |||||||| |||||| |||| || |||||||| ||||| || | | || Sbjct 1133417 AGACGGGTACCAAATTGACCATTCGGCGACAGCAGATTGATGTTGTTGCTTCCGACGAAG 1133358 Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155 | | || | || || ||| | ||||| |||||||||| |||||||| || Sbjct 1133357 TTCTGGGCGAGACCAACGATAGTGGTAGTCAGAGACGCTTCACCGTGATGGTACGCGGTC 1133298 Query 176156 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGG 176215 ||||||| ||| | | ||| ||||||||| || ||||| | || |||||| | | Sbjct 1133297 TTCTCTGAGACGTAACCGACCAGCTGCGCCACCTTGATCTCCTTCTGCAGATTCCGCTTG 1133238 Query 176216 AAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCA 176264 ||||| |||||| || || || || ||||||||||||||| |||| Sbjct 1133237 AAACAACCGTACAAGACTTTCCGCTGACCAGGCTTGAGACCATCGGCCA 1133189 >seq3 Length=1461739 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 102249 |||| || || || || || || ||||||||||| || |||||| |||||| | |||| Sbjct 1187617 TCGCTTTCGCTTGCGTAGAAGGCATCTTCTTCTCGGGCTCCTTCGCCGCTATCTTTTGGT 1187676 Query 102250 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 102309 | |||||||| ||||| ||||| || | |||||||| ||||| ||| || || | Sbjct 1187677 TGAAGAAGCGGGGTCTGATGCCTGGATTGACATTCTCCAATGAGCTCATCAGCCGAGATG 1187736 Query 102310 AGGG 102313 |||| Sbjct 1187737 AGGG 1187740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741996517440