Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq9 244 1e-59 seq1 147 3e-30 seq3 96.9 4e-15 seq7 89.7 6e-13 >seq9 Length=941136 Score = 244 bits (270), Expect = 1e-59 Identities = 730/1113 (66%), Gaps = 25/1113 (2%) Strand=Plus/Plus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| |||||||| || ||||| | ||| | || | ||| ||||| || || || ||| Sbjct 164656 CATCGGCGAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTCTGCG 164715 Query 106338 CAGTCTCAA---CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 106394 | ||| | ||||||| | |||| ||||| ||| | || ||||| || | Sbjct 164716 C---CTCGATGACGGGATAGTAGTTTCGAGAGATGACCTGGTCCAAGTTCTTGGTGACGA 164772 Query 106395 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 106454 ||||||||| || || || || | | || | || |||| | ||| | Sbjct 164773 CCTTTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCCGCTTCTCCATGTCGACGAAAG 164832 Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 106514 || ||||||| || || | ||| || ||||| ||| || | | |||||| | Sbjct 164833 CGGGGAGGGCGAGGGAGGCAAGATTACAGACAGCAACCTCGTCAGGCGCAGAGTACTCGA 164892 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 ||| || ||||| | |||||| |||||||| || | || | ||||| || Sbjct 164893 TAATCTCGGTACAAAGGTTGGAGGATTTAATCGTACCGAGATGTTGCTGGTTCGATTTGG 164952 Query 106575 TGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 ||| ||| || ||||||||||||||| |||| || ||||| ||||| | || ||| Sbjct 164953 CGTTCGCA-GCGTCCTTGTAGAGCATGAAGGGACCGCCAGTCTCGGTCTGAGCCTCGAGG 165011 Query 106634 ATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCT-CCGCCTC 106689 || || ||| | | || | | | | |||| || | ||| |||| || ||| Sbjct 165012 ATGGCGAACCAGAGCTTCTGAGCTTTG----ATGGTCTTTCGCCCCTTCCCAGCCTTCTC 165067 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCC 106747 |||| ||| || || || |||| ||| | | | | |||| |||||| || | Sbjct 165068 GTACGACTCGTACAGCGCCTCGAACTTCTC--CGAGTGAACATCGGCGAGACCGGGGCAC 165125 Query 106748 TTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCT 106807 | | ||||| | || | ||| | ||| || ||| || ||||||||||| ||||| Sbjct 165126 TCTGCGGGACACATGAGGGTCCAGTCACCGTCCGACTCGACACGCTTCATGAAGAGGTCG 165185 Query 106808 GGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAG 106866 | ||||| |||| | || || || | | ||| || ||||||| | ||| ||||| Sbjct 165186 GAGATCCAGAGGGCGTAGAACAGGTCCCGAGCACGGA-CCTCTTCTTTACCGTGGTTCTT 165244 Query 106867 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 106926 | || || |||||||| | ||| || |||||||| ||||| || |||| |||| | Sbjct 165245 CCTCAAGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAACGC 165304 Query 106927 TCCCTTTCGACGC---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||| ||| ||| |||| | ||||| ||||| ||||||| ||| |||| || Sbjct 165305 ACCCGGTCGCTTGTTTCCACCTTGGTCGACATATCGCGCCGTGGCGTCAAAGGCGCGGAG 165364 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043 ||| |||| ||||| | || | ||| || || || |||| || || || | Sbjct 165365 CATGGGAACGATACCGTTCGAGTAACCGTTGGTACCGGCAATATACGAGCCCTTAGCGCG 165424 Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 || | |||||||| | || || || || || ||| ||||| ||||| || | | Sbjct 165425 GACGTTGTGGATGTGGAGTCCGATTCCTCCGGCAGTCTTGGAGATCTGCGCGCAGGTCTT 165484 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163 || || | ||||| || | || ||||| ||||| |||||| ||||||||| || Sbjct 165485 GAGGGTCTCGTAGATCCCCTCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAGGATGA 165544 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 ||| || || | || ||||| || ||||||||||| || | ||||| |||| | Sbjct 165545 CATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTATCG 165604 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 | ||||| | ||| ||||| | ||| ||||||| | |||||||| |||| Sbjct 165605 CTCAGACATGAGATTGTAAGTCTCAATGACCTTGTCAATGTTGGCACCGTGGATACCGAC 165664 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 ||| |||||||| | ||||| ||||| ||| | || | || | || || | || Sbjct 165665 GGCAACACGCATGATCATGTGCTGGGGACGTTCGACGATTTTACCGTTGACGCGAAGGAG 165724 Query 107344 ATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||| ||| |||||||||| ||||||||| Sbjct 165725 GTAGGATCGCTCGAGGGTTTTGAAACCAAAGTA 165757 >seq1 Length=4122216 Score = 147 bits (162), Expect = 3e-30 Identities = 179/243 (74%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||||||||||||||| ||||| || || || || |||||| || || Sbjct 3090413 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 3090354 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || |||||||| | ||| | || | | ||| || |||||||||||||| Sbjct 3090353 GGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGAT 3090294 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 |||||| || ||||| || | |||||||||||||||| | ||||| ||| Sbjct 3090293 ACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAGGTG---GACTTCTCGTCTGT 3090237 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 || ||| |||| ||||| | |||||||||| || || || | || | |||||| || Sbjct 3090236 AATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCGTC 3090177 Query 117510 AAA 117512 ||| Sbjct 3090176 AAA 3090174 >seq3 Length=1461739 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||||||| || || ||||| ||||| | || ||||| |||||||||||| Sbjct 1187740 CCCTCATCTCGGCTGATGAGCTCATTGGAGAATGTCAATCCAGGCATCAGACCCCGCTTC 1187681 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||||||||| | |||||| ||| || || ||||||||||| || || || || || || Sbjct 1187680 TTCAACCAAAAGATAGCGGCGAAGGAGCCCGAGAAGAAGATGCCTTCTACGCAAGCGAAA 1187621 Query 117412 GCAAAAAGGCG 117422 || | ||||| Sbjct 1187620 GCGACTAGGCG 1187610 >seq7 Length=1170885 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 168486 AGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAG 168545 ||||| ||||||||||||||| ||| || || || |||||||| || | || Sbjct 1133417 AGACGGGTACCAAATTGACCATTCGGCGACAGCAGATTGATGTTGTTGCTTCCGACGAAG 1133358 Query 168546 TCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGAC 168605 | | || | ||| || ||| | | || ||||||| || |||||||| | | Sbjct 1133357 TTCTGGGCGAGACCAACGATAGTGGTAGTCAGAGACGCTTCACCGTGATGGTACGCGGTC 1133298 Query 168606 TTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGG 168665 || || | ||| || | |||| || |||||||| || || | || |||||| | | Sbjct 1133297 TTCTCTGAGACGTAACCGACCAGCTGCGCCACCTTGATCTCCTTCTGCAGATTCCGCTTG 1133238 Query 168666 AAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCCGCCA 168714 || ||| | |||| ||||||| ||| ||||||||||||||| |||| Sbjct 1133237 AAACAACCGTACAAGACTTTCCGCTGACCAGGCTTGAGACCATCGGCCA 1133189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980416512480