Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 140 7e-28 seq1 132 1e-25 seq7 84.2 5e-11 >seq4 Length=1296710 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || ||||| || || ||||| || || || ||||| |||| ||| || || || Sbjct 543109 TCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCC 543168 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 || || |||||||| || |||||||| || || || ||||||||||| || || || || Sbjct 543169 GTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTT 543228 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| || || || |||||| || ||||||||||| || || ||||| ||||| | Sbjct 543229 GTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGAT 543288 Query 195105 CGTCTTTCCTGT 195116 |||||| || || Sbjct 543289 CGTCTTGCCCGT 543300 >seq1 Length=4122216 Score = 132 bits (146), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || || ||| |||||||| || ||||| || || || ||||| |||| ||| |||| ||| Sbjct 3074016 TCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCC 3074075 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||||||||| || || ||||| || | ||| || |||||||| ||||| || ||||| Sbjct 3074076 GTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTT 3074135 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTA 195102 ||| || || || || ||||| || ||||||| | | || || ||||| ||||| Sbjct 3074136 GTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGAC--TCGACTTCGAGGGTG 3074193 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | || || ||||| | |||||| Sbjct 3074194 ATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 120 bits (132), Expect = 7e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| |||| |||||| | ||||| || | |||||||| ||||| || | ||| | Sbjct 3074328 TACTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCT 3074387 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | |||||||| || || || || ||||| ||||| || |||||| || |||||||||| Sbjct 3074388 GCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT 3074447 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | || || ||||| ||||| | ||||| || || | |||||| ||||| | |||| Sbjct 3074448 CGGACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCA 3074507 Query 195140 T 195140 | Sbjct 3074508 T 3074508 Score = 102 bits (112), Expect = 2e-16 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 194960 TATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || ||||||| | |||| |||| || || || | |||||| || |||||||| | ||| Sbjct 3074922 TACTGTAATCAGACAAG-GTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAATCGC 3074980 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || |||||||| || || || || ||||| || || || ||||||||| ||||||||| Sbjct 3074981 TGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTG 3075040 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || ||||||| ||||| || || Sbjct 3075041 TCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCGGT 3075078 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| || | ||| || | || || || |||||||| || |||||||| | || | Sbjct 3074601 TACTGTAGTCAGAAAGGGTGCGACCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCT 3074660 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||||||||||||||||| || ||||| || || || |||||| || || ||||||| Sbjct 3074661 GCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 3074720 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || || ||||| || | ||||| || || Sbjct 3074721 CGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 3074757 >seq7 Length=1170885 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||| || ||||| || | ||| || |||||||| || || || || Sbjct 1015513 CCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGTGGGATACCCTCC 1015454 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || ||||||||||| || || || ||||| Sbjct 1015453 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTG 1015394 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 1015393 ATGGTCTTGCCCGT 1015380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480860807884