Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq4 84.2 1e-11 >seq1 Length=4122216 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || ||| | ||||| ||| || ||||| ||||| ||||| ||| Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3074064 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| | || || |||||||| ||||| || || | ||| ||||||||| | || Sbjct 3074065 AGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGA 3074124 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| ||| ||| | || | || | || ||| || Sbjct 3074125 ATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGACT 3074184 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| |||||||| || ||||| |||||||| ||||||||||| Sbjct 3074185 TCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||||| || ||||| ||||| ||||| | || | | | | | Sbjct 3073460 CAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACG-TCCTCCCGT 3073518 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || ||||| || |||||||| || ||||||||||||||| | || | |||||||||| Sbjct 3073519 CCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTTGT 3073578 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | |||||| ||||| | |||| || | |||||| |||| || |||| Sbjct 3073579 CCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACTTCGAGAGTGATGG 3073638 Query 34948 TTTTTCCCGT 34957 | ||||| || Sbjct 3073639 TCTTTCCGGT 3073648 >seq4 Length=1296710 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| ||||| |||| ||| | || || ||||| ||||| ||||| ||| Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | | || || ||||| || ||||| || || || || ||||||||| | || Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 34875 ACCCCCTCCTTGTC 34888 | ||||||||||| Sbjct 543218 ATACCCTCCTTGTC 543231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633394263456