Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 seq1 147 3e-30 seq3 96.9 4e-15 seq7 89.7 6e-13 >seq9 Length=941136 Score = 197 bits (218), Expect = 2e-45 Identities = 721/1115 (65%), Gaps = 29/1115 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 ||||||||| |||||||||| ||| ||| || | || || | || | || | Sbjct 165757 TACTTTGGTTTCAAAACCCTCGAGCGATCCTACCTCCTTCGCGTCAACGGTAAAATCGTC 165698 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 ||| || ||| ||||| ||||||| || || |||| |||||||| | ||||||| Sbjct 165697 GAACGTCCCCAGCACATGATCATGCGTGTTGCCGTCGGTATCCACGGTGCCAACATTGAC 165638 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 ||| | ||||| ||| | ||||| | | |||| ||||| | || ||| Sbjct 165637 AAGGTCATTGAGACTTACAATCTCATGTCTGAGCGATACTTCACCCACGCCTCCCCTACC 165578 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 |||||||| || ||||| || | || || ||||| ||||||||| |||||| ||| Sbjct 165577 CTCTTCAACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTTGTCGCCATGAAG 165518 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| || | || ||||| | || || | | || ||||| ||||| ||| Sbjct 165517 GACGACTCGATTGAGGGGATCTACGAGACCCTCAAGACCTGCGCGCAGATCTCCAAGACT 165458 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || || || || | |||||||| | || | || || || |||| || Sbjct 165457 GCCGGAGGAATCGGACTCCACATCCACAACGTCCGCGCTAAGGGCTCGTATATTGCCGGT 165398 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || ||| | || | ||||| |||| ||||| |||| ||| ||||||| ||||| Sbjct 165397 ACCAACGGTTACTCGAACGGTATCGTTCCCATGCTCCGCGCCTTTGACGCCACGGCGCGA 165338 Query 75566 TATGTAAATCAAGCGGGGCGTC--GCAA--GGGGTCCATCGCGGTCTACTTGGAACCATG 75621 ||||| | |||| | || | || | ||| | |||| ||||| | || || || Sbjct 165337 TATGTCGACCAAG-GTGGAAACAAGCGACCGGGTGCGTTCGCCATCTACCTCGAGCCCTG 165279 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| ||||| ||| | |||||||| || || | ||||| ||| | ||||||| || Sbjct 165278 GCACGCCGACATCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGTAAAGAAGAGG-TCC 165220 Query 75682 GTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 ||| | | || || || | |||| ||||| | ||||| ||||||||||| || ||| Sbjct 165219 GTGCTCGGGACCTGTTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGT 165160 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGT 75798 || ||| | ||| | || | ||||| | || || |||||| |||| | | | Sbjct 165159 CGGACGGTGACTGGACCCTCATGTGTCCCGCAGAGTGCCCCGGTCTCGCCGATGTTCACT 165100 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATGCGA 75857 | ||| |||| || || || ||| ||| || ||| ||| || | |||| Sbjct 165099 CG--GAGAAGTTCGAGGCGCTGTACGAGTCGTACGAGAAGGCTGGGAAGGG-----GCGA 165047 Query 75858 CTGTACCAGC----CGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 | |||| | | | || | | ||| || || ||| | | ||||| |||||||| Sbjct 165046 AAG-ACCATCAAAGCTCAGAAGCTCTGGTTCGCCATCCTCGAGGCTCAGACCGAGACTGG 164988 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || | ||||| |||||||| ||| ||| || ||||| | || | || Sbjct 164987 CGGTCCCTTCATGCTCTACAAGGACGCTGCGAACGCCAAATCGAACCAGCAACATCTCGG 164928 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || || || ||| || ||||| || || ||| | |||||| | | || ||| Sbjct 164927 TACGATTAAATCCTCCAACCTTTGTACCGAGATTATCGAGTACTCTGCGCCTGACGAGGT 164868 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 ||||| || ||| | || || ||||||| || | ||| | |||| || Sbjct 164867 TGCTGTCTGTAATCTTGCCTCCCTCGCCCTCCCCGCTTTCGTCGACATGGAGAAGCGGGT 164808 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | || | | || || || || ||||||||| | || ||||| || | ||| || Sbjct 164807 CTACGACTTCAAGAAGCTCCACGAGATCACAAAGGTCGTCACCAAGAACTTGGACCAGGT 164748 Query 76153 CATTGACAGAAATTTTTATCCCG---TTGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 ||| |||| | ||||||| | ||| |||| || || || ||||| ||| | Sbjct 164747 CATCTCTCGAAACTACTATCCCGTCATCGAG---GCGCAGAACTCCAACATGCGCCACCG 164691 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 || | ||| | ||||| || |||||||| |||| Sbjct 164690 CCCCGTCGGTCTCGGTGTCCAGGGTCTCGCCGATG 164656 >seq1 Length=4122216 Score = 147 bits (162), Expect = 3e-30 Identities = 179/243 (74%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 ||||| |||||| | || | || || || |||||||||| | ||||| |||| ||| Sbjct 3090174 TTTGACGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAGTGG 3090233 Query 65050 TTT---GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 || ||| ||||| | |||||||||||||||| | || ||||| || ||| Sbjct 3090234 ATTACAGACGAGAAGTC---CACCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTCGAG 3090290 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATG 65166 ||||||||||||||||| || ||| | | || | ||| | |||||||| || |||||| Sbjct 3090291 GGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTCATG 3090350 Query 65167 CCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTT 65226 || || || |||||| || || || || ||||| ||||||||||||||| || ||| Sbjct 3090351 CCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTT 3090410 Query 65227 GCC 65229 ||| Sbjct 3090411 GCC 3090413 >seq3 Length=1461739 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 ||||| | || || || || || || || ||||||||||| || || ||| |||||| Sbjct 1187610 CGCCTAGTCGCTTTCGCTTGCGTAGAAGGCATCTTCTTCTCGGGCTCCTTCGCCGCTATC 1187669 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||||||||||||||||||||| ||||| || | ||||| ||||| || || | Sbjct 1187670 TTTTGGTTGAAGAAGCGGGGTCTGATGCCTGGATTGACATTCTCCAATGAGCTCATCAGC 1187729 Query 65200 CGAGATGAGGG 65210 ||||||||||| Sbjct 1187730 CGAGATGAGGG 1187740 >seq7 Length=1170885 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417 |||| ||||||||||||||| ||| ||||||| |||| | ||| ||| | ||||| Sbjct 1133189 TGGCCGATGGTCTCAAGCCTGGTCAGCGGAAAGTCTTGTACGGTTGTTTCAAGCGGAATC 1133248 Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477 | || | || || |||||||| || |||| | || ||| | || ||| | ||||||| Sbjct 1133249 TGCAGAAGGAGATCAAGGTGGCGCAGCTGGTCGGTTACGTCTCAGAGAAGACCGCGTACC 1133308 Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 | || ||||||| || | | ||| || ||| | || | ||| | || Sbjct 1133309 ATCACGGTGAAGCGTCTCTGACTACCACTATCGTTGGTCTCGCCCAGAACTTCGTCGGAA 1133368 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCT 14586 |||||||| || || || ||| ||||||||||||||| ||||| Sbjct 1133369 GCAACAACATCAATCTGCTGTCGCCGAATGGTCAATTTGGTACCCGTCT 1133417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569212229760