Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 206 3e-47 seq9 187 3e-41 seq3 123 3e-22 >seq1 Length=4122216 Score = 206 bits (228), Expect = 3e-47 Identities = 210/268 (78%), Gaps = 13/268 (5%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| ||| ||||||||||| || |||||||||||||| ||||||| | | Sbjct 3090373 TCGTTGGAGAAGGTGAGACCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCG 3090314 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || ||| ||||| ||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct 3090313 AAGGAGCCGGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAG 3090254 Query 869321 GTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACC 869377 ||| || || || || | |||||||||| ||||||||||||||| ||| | | Sbjct 3090253 GTG--GA----CTTCTCGTCTGTAATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATG 3090200 Query 869378 GACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCG-GCCGGGTCCTTGACAT 869435 | || | |||||||||||| |||||||| ||||| || || |||||||||| | Sbjct 3090199 CAGGGGATGGTGTCGATGGCGTCAAAGAGGTAGGTCC--GGCGAGCGGGGTCCTTGATGT 3090142 Query 869436 AGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||||| || ||||| || |||||||| Sbjct 3090141 AGGTGTCAATAAGGAGGGAGTAGGTCTC 3090114 >seq9 Length=941136 Score = 187 bits (206), Expect = 3e-41 Identities = 341/500 (68%), Gaps = 27/500 (5%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || ||||||||| ||| |||| ||||||||||||| |||| ||||| || Sbjct 165327 TGGTCGACATATCGCGCCGTGGCGTCAAAGGCGCGGAGCATGGGAACGATACCGTTCGAG 165386 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||| || || | || | ||| ||||| || ||||| | | ||| Sbjct 165387 TAACCGTTGGTACCGGCAATATACGAGCCCTTAGCGCGGACGTTGTGGATGTGGAGTCCG 165446 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| ||||||| ||||| || |||||||| ||||| Sbjct 165447 ATTCCTCCGGCAGTCTTGGAGATCTGCGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTCA 165506 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||||||| |||||||| | || || ||||| || || |||| |||| | || ||| Sbjct 165507 ATCGAGTCGTCCTTCATGGCGACAAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCG 165566 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| || || | || |||||| | || |||||| | ||| || Sbjct 165567 GCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTATCGCTCAGACATGAGATTGTAAGT- 165625 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 | | | | | ||| | || |||| || | | |||| ||| || Sbjct 165626 -----------CTCAATGACCTTGTCAATGTTGGCA---CCGTGGATACCGACGGCAACA 165671 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGA------CGACGCCGCGCACCTTGGTCAGG 1630479 ||||||| ||||| |||||| || ||||||| || | |||| | || ||| Sbjct 165672 CGCATGATCATGTGCTGGGGACGTTCGACGATTTTACCGTTGACGCGAA----GG--AGG 165725 Query 1630480 TAGGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGG 1630539 ||||| || | ||| ||| ||||||||| | ||||| ||||||| || | | Sbjct 165726 TAGGATCGCTCGAGGGTTTTGAAACCAAAGTAGTTGTAAGCAAAGTCGCGGTTGTAGATG 165785 Query 1630540 ATGGCGGCGTCGAGGGCATC 1630559 ||||| | |||||| |||| Sbjct 165786 ATGGCAGAGTCGAGAACATC 165805 Score = 102 bits (112), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1628389 AGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGC 1628448 || ||||| ||| | ||||| | ||| | |||||| || | | | | | || | Sbjct 165114 AGACCGGGGCACTCTGCGGGACACATGAGGGTCCAGTCACCGTCCGACTCGACACGCTTC 165173 Query 1628449 ATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTG 1628508 || |||||||| | |||| || ||||| || ||||| || || ||| ||| || || Sbjct 165174 ATGAAGAGGTCGGAGATCCAGAGGGCGTAGAACAGGTCCCGAGCACGGACCTCTTCTTTA 165233 Query 1628509 CCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAG 1628568 ||||||||||| | | |||||| | |||| |||||||||||||| ||||| |||||| Sbjct 165234 CCGTGGTTCTTCCTCAAGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAG 165293 Query 1628569 CAGGCAAAGGCGCCCTTGCGCTTG 1628592 ||| || || ||| |||||| Sbjct 165294 ATGGCGAACGCACCCGGTCGCTTG 165317 >seq3 Length=1461739 Score = 123 bits (136), Expect = 3e-22 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18254 TCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCA 18313 ||||||| || || ||| ||||| | || |||||| | || |||||||||| || || Sbjct 1321217 TCCAGTCAGGGACAGAGCACGGCGTGACCCTCGGCACCCCGATCGGCCTCTTAGTCCACA 1321276 Query 18314 ACCGCGACCAGCGGCCCGTCGACTATTCCGACA-TGTGCAAGGTGCCGCGGCCCTCACAC 18372 || || || || || |||||| | || | || | | || || || |||||| Sbjct 1321277 ACAAAGATCAACGACCACACGACTACGCTGAGACTGACCTATAC-CCTCGTCCTTCACAC 1321335 Query 18373 GCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCG 18432 |||||||||||||| | || ||||||||| ||||||||||||||||||| || ||| | Sbjct 1321336 GCCGACTACACCTATCTCGCAAAGTACGGCGTCAAGGCGTCGTCGGGCGGTGGACGGGCC 1321395 Query 18433 TCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || ||||| |||||| || || || || || || || | || ||||| Sbjct 1321396 TCAGCCCGGGAGACCATCGGCCGAGTGGCTGCTGGTGCCATTGCTGAGAA 1321445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134932636484