Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq4 104 2e-17 seq7 82.4 5e-11 >seq1 Length=4122216 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||| || ||||||| || ||||||||| ||||| ||||| || Sbjct 3074005 CCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3074064 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | ||| | || || || || || |||||||| |||| ||| ||||||||| | || Sbjct 3074065 AGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGA 3074124 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || ||| ||| | || | || ||| |||||| Sbjct 3074125 ATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGACT 3074184 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || ||||||||||| || ||||||||||| Sbjct 3074185 TCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||||||||||||||| ||||| ||||| | | | | | || || Sbjct 3073464 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCCGTCCTCT 3073523 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| ||||| ||||| ||||||||||||||| | || | ||||||||||| Sbjct 3073524 AGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTTGTC 3073579 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| ||||| ||||||||||||| ||| ||||||||| | || | ||||||||| Sbjct 3074948 TCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATACCCTCCTTG 3075007 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| | || | || || |||||| || | ||| ||| Sbjct 3075008 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTAATG 3075067 Query 34943 GTCTTTCCCGTGAGGGTCTTTAC 34965 ||||| || || |||||||| || Sbjct 3075068 GTCTTGCCGGTAAGGGTCTTGAC 3075090 >seq4 Length=1296710 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| |||| |||||||| | ||| ||||||||| ||||| ||||| || Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | | || || || ||||| ||||||||||| || || ||||||||| | || Sbjct 543158 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 543217 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || ||||| | || | || | |||||| Sbjct 543218 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACT 543277 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGG 34957 || | ||| || ||||| ||||| ||| Sbjct 543278 TCGAGGGTGATCGTCTTGCCCGTAAGG 543304 >seq7 Length=1170885 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| |||| |||||||||||||| |||| ||| ||||||||| | || | ||||||| Sbjct 1015512 CATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGTGGGATACCCTCCT 1015453 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || |||||| | || | || || |||||| || | ||| | Sbjct 1015452 TGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGA 1015393 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||||| ||||| ||| | |||||| Sbjct 1015392 TGGTCTTGCCCGTAAGGCT-ATTACAA 1015367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692593592188