Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq4 113 4e-20 seq7 84.2 2e-11 >seq1 Length=4122216 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || || ||||||||| || || Sbjct 3090418 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTG 3090359 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| || | |||||| |||| |||| ||| ||| ||| || ||| Sbjct 3090358 AGACCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAG 3090299 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CT 120818 || | ||||| ||| ||||||||||| | ||||||||| || || | | ||| | || Sbjct 3090298 AAGATACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAGGTGGACTTCTCGTCT 3090239 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 || |||||||||| ||||| |||||||| || Sbjct 3090238 GT-AATCCACTTCAGCGCCCAGTCGGCCTTCTT 3090207 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| | ||| |||||||| ||||| Sbjct 3074035 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCGTCTTCGAGCTGTTTGCCG 3074094 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | ||||||||||| || || || || || ||||| |||| || |||| Sbjct 3074095 GCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTGGATC-TTGGCTTT 3074153 Query 133584 AGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | | || | |||||| ||| ||| || |||| ||||| |||||||||||| || || Sbjct 3074154 AACGTTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTGAGGGT 3074213 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3074214 CTTCACGAAGATCTGCAT 3074231 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | ||||| || ||| |||| | ||||||||||| || ||||| || |||||| Sbjct 3074354 TCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTG 3074413 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||||| | ||| || |||| ||||| Sbjct 3074414 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGGACGACTCAACTTCGAGGGTGATT 3074473 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| |||||||| ||||| |||||||| Sbjct 3074474 GTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| | ||||||||| ||| | || | ||||||||||| || ||||| || ||||| Sbjct 3074947 GTCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATACCCTCCTT 3075006 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | |||| ||||| | || ||| || |||| ||| | Sbjct 3075007 GTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTAAT 3075066 Query 133625 GGTTTTGCCGGTCAGAGTTTTTAC 133648 ||| |||||||| || || || || Sbjct 3075067 GGTCTTGCCGGTAAGGGTCTTGAC 3075090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | || | ||||||||||| ||||| ||||| ||||| Sbjct 3074626 GTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGAGGAATGCCCTCCTT 3074685 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| | ||| || || | |||| Sbjct 3074686 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGAGTGAT 3074745 Query 133625 GGTTTTGCCGGTCAG 133639 ||| |||||||| || Sbjct 3074746 GGTCTTGCCGGTAAG 3074760 >seq4 Length=1296710 Score = 113 bits (124), Expect = 4e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| | || |||||| ||||||||||| Sbjct 543127 GGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCCGTCCTCAAGCTGCTTGCC 543186 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||||||||||||||| |||||||| || |||||||| |||||| ||| Sbjct 543187 GGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTT 543246 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | |||| ||||||| | ||| || |||| ||||| || ||||| || || Sbjct 543247 GACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGATCGTCTTGCCCGTAAG 543303 >seq7 Length=1170885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | |||||| || ||| |||| | ||||||||||| || ||||| || |||||| Sbjct 1015510 TCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTG 1015451 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 1015450 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 1015391 Query 133626 GTTTTGCCGGTCAG 133639 || ||||| || || Sbjct 1015390 GTCTTGCCCGTAAG 1015377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420485776480