Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 232 8e-56 seq1 147 3e-30 seq3 98.7 1e-15 >seq9 Length=941136 Score = 232 bits (256), Expect = 8e-56 Identities = 727/1113 (65%), Gaps = 25/1113 (2%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| |||||||| || ||||| | ||| | || | ||| ||||| || || || ||| Sbjct 164656 CATCGGCGAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTCTGCG 164715 Query 111111 CAGTCTCAA---CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 | ||| | ||||||| | |||| ||||| ||| | || ||||| || | Sbjct 164716 C---CTCGATGACGGGATAGTAGTTTCGAGAGATGACCTGGTCCAAGTTCTTGGTGACGA 164772 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 111227 ||||||||| || || || || | | || | || |||| | ||| | Sbjct 164773 CCTTTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCCGCTTCTCCATGTCGACGAAAG 164832 Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 111287 || ||||||| || || | ||| || ||||| ||| || | | |||||| | Sbjct 164833 CGGGGAGGGCGAGGGAGGCAAGATTACAGACAGCAACCTCGTCAGGCGCAGAGTACTCGA 164892 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCT 111347 ||| || ||||| | |||||| |||||||| || | || | ||||| || Sbjct 164893 TAATCTCGGTACAAAGGTTGGAGGATTTAATCGTACCGAGATGTTGCTGGTTCGATTTGG 164952 Query 111348 TGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 ||| ||| || ||||||||||||||| |||| || ||||| ||||| | | ||| Sbjct 164953 CGTTCGCA-GCGTCCTTGTAGAGCATGAAGGGACCGCCAGTCTCGGTCTGAGCCTCGAGG 165011 Query 111407 ATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCT-CCGCCTC 111462 || || ||| | | || | | | | |||| || | ||| |||| || ||| Sbjct 165012 ATGGCGAACCAGAGCTTCTGAGCTTTG----ATGGTCTTTCGCCCCTTCCCAGCCTTCTC 165067 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCC 111520 |||| ||| || || || |||| ||| | | | | |||| |||||| || | Sbjct 165068 GTACGACTCGTACAGCGCCTCGAACTTCTC--CGAGTGAACATCGGCGAGACCGGGGCAC 165125 Query 111521 TTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCT 111580 | | ||||| | || | ||| | ||| | ||| || ||||||||||| ||||| Sbjct 165126 TCTGCGGGACACATGAGGGTCCAGTCACCGTCCGACTCGACACGCTTCATGAAGAGGTCG 165185 Query 111581 GGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 | ||||| |||| | || || || | | ||| || ||||||| | ||| ||||| Sbjct 165186 GAGATCCAGAGGGCGTAGAACAGGTCCCGAGCACGGA-CCTCTTCTTTACCGTGGTTCTT 165244 Query 111640 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 111699 | || || |||||||| | ||| || |||||||| ||||| || |||| |||| | Sbjct 165245 CCTCAAGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAACGC 165304 Query 111700 TCCCTTTCGACGC---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||| ||| ||| |||| | ||||| ||||| ||||||| ||| |||| || Sbjct 165305 ACCCGGTCGCTTGTTTCCACCTTGGTCGACATATCGCGCCGTGGCGTCAAAGGCGCGGAG 165364 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| |||| ||||| | || | ||| || || || |||| || || || | Sbjct 165365 CATGGGAACGATACCGTTCGAGTAACCGTTGGTACCGGCAATATACGAGCCCTTAGCGCG 165424 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 || | |||||||| | || || || || || ||| ||||| ||||| || | | Sbjct 165425 GACGTTGTGGATGTGGAGTCCGATTCCTCCGGCAGTCTTGGAGATCTGCGCGCAGGTCTT 165484 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 || || | ||||| || | || ||||| ||||| |||||| ||||||||| || Sbjct 165485 GAGGGTCTCGTAGATCCCCTCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAGGATGA 165544 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 ||| || || | || ||||| || ||||||||||| || | ||||| |||| | Sbjct 165545 CATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTATCG 165604 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | ||||| | ||| ||||| | ||| ||||||| | |||||||| |||| Sbjct 165605 CTCAGACATGAGATTGTAAGTCTCAATGACCTTGTCAATGTTGGCACCGTGGATACCGAC 165664 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116 || || ||||||| ||||| ||| || ||| | || | || | || || | || Sbjct 165665 GGCAACACGCATGATCATGTGCTGGGGACGTTCGACGATTTTACCGTTGACGCGAAGGAG 165724 Query 112117 ATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| ||| |||||||||| ||||||||| Sbjct 165725 GTAGGATCGCTCGAGGGTTTTGAAACCAAAGTA 165757 >seq1 Length=4122216 Score = 147 bits (162), Expect = 3e-30 Identities = 179/243 (74%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||||||||| ||||| || || || || |||||| ||||| Sbjct 3090413 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 3090354 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | | ||| || |||||||||||||| Sbjct 3090353 GGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGAT 3090294 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 |||||| || ||||| || | ||||| |||||||||| | ||||| | || Sbjct 3090293 ACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAGGTG---GACTTCTCGTCTGT 3090237 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 || ||| |||| ||||| | |||||||||| || || || | || | |||||| || Sbjct 3090236 AATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCGTC 3090177 Query 122895 AAA 122897 ||| Sbjct 3090176 AAA 3090174 >seq3 Length=1461739 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||||||| || || ||||| ||||| | || ||||| |||||||||||| Sbjct 1187740 CCCTCATCTCGGCTGATGAGCTCATTGGAGAATGTCAATCCAGGCATCAGACCCCGCTTC 1187681 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||||| | |||||| ||| || || ||||||||||| || || || || || || Sbjct 1187680 TTCAACCAAAAGATAGCGGCGAAGGAGCCCGAGAAGAAGATGCCTTCTACGCAAGCGAAA 1187621 Query 122797 GCAAAAAGGCGT 122808 || | |||||| Sbjct 1187620 GCGACTAGGCGT 1187609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031591779200