Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 251 9e-62 seq1 156 5e-33 seq3 95.1 1e-14 >seq9 Length=941136 Score = 251 bits (278), Expect = 9e-62 Identities = 894/1384 (65%), Gaps = 35/1384 (3%) Strand=Plus/Plus Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 |||||| ||||| |||||||| || || | || |||| ||||||||| || ||||| Sbjct 164324 CGTGTAGGGCTCGAAGCACTCGTTCCAGCCTAGAATCTGGGATGTGGAGGCGGTAGGCAT 164383 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 ||| || | |||||| ||| || | ||| | ||| | || | | ||| | | Sbjct 164384 GGGAGCGACAAGAAGGGAGTTTCGTACACCGTGCTCCTTGATCTGGGCTCGGAGGGTGGA 164443 Query 118313 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATA--TCAAACTGGAGGATACCTTGG 118370 |||||| | || | || | | ||| || | || || ||||| | || || Sbjct 164444 CCAGTCCCAAA-GATCGGTGGGGACACG-GCCCCAGAGGTCGAATTGGAGTTTGCCCTGC 164501 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430 ||| || || ||||| ||||||| || ||| ||| |||| ||| | | Sbjct 164502 GACATGGGGGAACCCTCGTATGTCTCGTACTTGCCGAGCTCCTGGGCCATCTCGCACGAC 164561 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 118490 ||||||||||| ||||| || ||||| || || || | || | | | || || Sbjct 164562 GCCTCGAGGGCGGCGTGGTAGATTGTCTCGAAGATCTGGATGTTGAGTTCGCGAGCGGCG 164621 Query 118491 TCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 118550 || || || | | ||| || || |||| |||||||| ||||||||||| Sbjct 164622 GGAGATTCGAAGGGCATGCGGAGAGCCATGAAGGCATCGGCGAGACCCTGGACACCGAGA 164681 Query 118551 CCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA---CGGGATAAAAATTC 118607 || | ||||| || | ||| || || ||| | || ||| | ||||||| | || Sbjct 164682 CCGACGGGGCGGTGGCGCATGTTGGAGTTCTGCGC---CTCGATGACGGGATAGTAGTTT 164738 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 | | ||| ||| | | || |||||||| ||||||||||| || || ||||| | | Sbjct 164739 CGAGAGATGACCTGGTCCAAGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTG 164798 Query 118668 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 118727 | || | || |||| | ||| | || ||||||| || || |||||| Sbjct 164799 AAGTCGTAGACCCGCTTCTCCATGTCGACGAAAGCGGGGAGGGCGAGGGAGGCAAGATTA 164858 Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTC 118787 || |||| ||| || ||| |||||| ||||| || || || | ||| || Sbjct 164859 CAGACAGCAACCTCGTCAGGCGCAGAGTACTCGATAATCTCGGTACAAAGGTTGGAGGAT 164918 Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATG 118847 ||||| || || | | | || || || || | ||| || |||||||| |||||| Sbjct 164919 TTAATCGTACCGAGATGTTGCTGGTTCGATTTGGCGTTCGCAGCGTCCTTGTAGAGCATG 164978 Query 118848 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGG 118906 | || || ||||| || || | || ||| || || ||||| | || | |||| Sbjct 164979 AAGGGACCGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAACCAGAGCTTCTG-AGCTTT 165037 Query 118907 CACAGTGGCGTTGGCTCGCCCCT------CTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 | ||| || |||||||| | | ||||||| ||| || || || || Sbjct 165038 GA---TGGTCTT---TCGCCCCTTCCCAGCCTTCTCGTACGACTCGTACAGCGCCTCGAA 165091 Query 118961 CTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 || || || | | | || | ||| || || || | || || | ||| | ||| Sbjct 165092 CT--TCTCCGAGTGAACATCGGCGAGACCGGGGCACTCTGCGGGACACATGAGGGTCCAG 165149 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078 | ||| || ||| || ||||||||||||||||| | ||||||||| || |||| || Sbjct 165150 TCACCGTCCGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAACAGG 165209 Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138 |||||| || | ||||| | || || || | ||| || | || || | ||| Sbjct 165210 TCCCGAGCACGGACCTCTTCTTTACCGTGGTTCTTCCTCAAGTCGAGGAACTCGAAGATG 165269 Query 119139 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGG 119195 || |||||||| || || ||||| | |||| | ||| || ||| | ||| Sbjct 165270 TCGGCGTGCCAGGGCTCGAGGTAGATGGCGAACGCACCCGGTCGCTTGTTTCCACCTTGG 165329 Query 119196 TTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG 119255 | ||||| | ||| ||||||| ||| | || ||||| |||| |||||| | || | Sbjct 165330 TCGACATATCGCGCCGTGGCGTCAAAGGCGCGGAGCATGGGAACGATACCGTTCGAGTAA 165389 Query 119256 CCATTTGTCCCCCGAATA--CGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAA 119313 || || || || |||| |||| | | | || | ||| | ||||||||| | || | Sbjct 165390 CCGTTGGTACCGGCAATATACGAGCCCT--TAGCGCGGACGTTGTGGATGTGGAGTCCGA 165447 Query 119314 TACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 119373 | || || || ||| ||||| |||||||| | |||| | |||||||||| || | Sbjct 165448 TTCCTCCGGCAGTCTTGGAGATCTGCGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTCAA 165507 Query 119374 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAG 119433 ||||||| |||| | |||| ||||||||| |||||||| || |||| ||||| | Sbjct 165508 TCGAGTCGTCCTTCATGGCGACAAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGG 165567 Query 119434 CGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCT 119493 |||||||||| || || | |||||| |||| | | ||||| | ||| |||| Sbjct 165568 CGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTATCGCTCAGACATGAGATTGTAAGTCT 165627 Query 119494 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATT 119553 | | ||| | ||||| | ||||| ||||||| | || ||||| | ||||| | Sbjct 165628 CAATGACCTTGTCAATGTTGGCACCGTGGATACCGACGGCAACACGCATGATCATGTGCT 165687 Query 119554 GGGG 119557 |||| Sbjct 165688 GGGG 165691 >seq1 Length=4122216 Score = 156 bits (172), Expect = 5e-33 Identities = 184/246 (75%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||||||||| |||||||||||||| || || |||||| ||||| Sbjct 3090413 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 3090354 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 3090353 GGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGAT 3090294 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTAT-C 130191 ||||| || || || || | ||| ||||| || |||| ||||| | || | Sbjct 3090293 ACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAAGG---TGGACTTCTCGTCTGT 3090237 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 || |||||||| |||||| | ||||| |||| ||| || |||| ||| | ||| || || Sbjct 3090236 AATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCGTC 3090177 Query 130252 AAAGAG 130257 |||||| Sbjct 3090176 AAAGAG 3090171 >seq3 Length=1461739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || ||| |||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 1187740 CCCTCATCTCGGCTGATGAGCTCATTGGAGAATGTCAATCCAGGCATCAGACCCCGCTTC 1187681 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||| || || || || ||||| ||||||||||| || || || || ||||| Sbjct 1187680 TTCAACCAAAAGATAGCGGCGAAGGAGCCCGAGAAGAAGATGCCTTCTACGCAAGCGAAA 1187621 Query 130154 GC 130155 || Sbjct 1187620 GC 1187619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434798017120