Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 224 1e-53 seq1 163 3e-35 seq7 107 2e-18 seq3 84.2 3e-11 >seq9 Length=941136 Score = 224 bits (248), Expect = 1e-53 Identities = 929/1449 (64%), Gaps = 25/1449 (2%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGATG 104215 || |||||| |||||||||| ||| ||| || | || || | ||| | | Sbjct 165757 TACTTTGGTTTCAAAACCCTCGAGCGATCCTACCTCCTTCGCGTCAACGGTAAAATCGTC 165698 Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 ||| || ||| ||||| ||||||| || ||| ||||||| || || | ||||||| Sbjct 165697 GAACGTCCCCAGCACATGATCATGCGTGTTGCCGTCGGTATCCACGGTGCCAACATTGAC 165638 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 104335 ||| | ||||| ||| | ||||| | | |||| ||||| | || ||| Sbjct 165637 AAGGTCATTGAGACTTACAATCTCATGTCTGAGCGATACTTCACCCACGCCTCCCCTACC 165578 Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 |||||||| || ||||| || | ||||||||||| ||||||||| |||||| ||| Sbjct 165577 CTCTTCAACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTTGTCGCCATGAAG 165518 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||||| || | || ||||| | || || | | || ||||| ||||| ||| Sbjct 165517 GACGACTCGATTGAGGGGATCTACGAGACCCTCAAGACCTGCGCGCAGATCTCCAAGACT 165458 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 || || || || || | |||||||| | || | || || || |||| || Sbjct 165457 GCCGGAGGAATCGGACTCCACATCCACAACGTCCGCGCTAAGGGCTCGTATATTGCCGGT 165398 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || ||| | || | ||||| |||| ||||| |||| ||| ||||||| ||||| Sbjct 165397 ACCAACGGTTACTCGAACGGTATCGTTCCCATGCTCCGCGCCTTTGACGCCACGGCGCGA 165338 Query 104576 TATGTAAATCAAGCTGG---GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 ||||| | |||| ||| ||| ||| | |||| |||| || ||||| ||| Sbjct 165337 TATGTCGACCAAGGTGGAAACAAGCGACCGGGTGCGTTCGCCATCTACCTCGAGCCCTGG 165278 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| || ||| | |||||||| || ||| | ||||| ||| | || |||| | | Sbjct 165277 CACGCCGACATCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGTAAAGAAGAGG-TCCG 165219 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || || || |||| ||| |||||||| | || |||||||||||| | || ||| Sbjct 165218 TGCTCGGGACCTGTTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTC 165159 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG--CCGTG 104809 | || | ||| | ||| | ||||| | || || |||||| |||||| | | Sbjct 165158 GGACGGTGACTGGACCCTCATGTGTCCCGCAGAGTGCCCCGGTCTCGCCGATGTTCACTC 165099 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG--TCGGGCGACTGCGA 104867 | ||| |||| || || || ||| ||||||| | | || |||||| || Sbjct 165098 G--GAGAAGTTCGAGGCGCTGTACGAGTCGTACGAGAAGGCTGGGAAGGGGCGA--AAGA 165043 Query 104868 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | | |||| | || | | ||| || || ||| || |||| ||||||||||| Sbjct 165042 CCATCAAAGCT-CAGAAGCTCTGGTTCGCCATCCTCGAGGCTCAGACCGAGACTGGCGGT 164984 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| ||||| ||| | ||| | || || | || | ||| Sbjct 164983 CCCTTCATGCTCTACAAGGACGCTGCGAACGCCAAATCG-AACCAGCAACATCTCGGTAC 164925 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || ||||| || ||||| || || | || | | | || ||| || Sbjct 164924 GATTAAATCCTCCAACCTTTGTACCGAGATTATCGAGTACTCTGCGCCTGACGAGGTTGC 164865 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 105105 ||| ||||| || || || |||| |||||| | || || |||| | | Sbjct 164864 TGTCTGTAATCTTGCCTCCCTCGCCCTCCCCGCTTTCGTCGACATGGAGAAGCGGGTCTA 164805 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | || |||||||| | || || |||||||| ||| | || || || Sbjct 164804 CGACTTCAAGAAGCTCCACGAGATCACAAAGGTCGTCACCAAGAACTTGGACCAGGTCAT 164745 Query 105166 TGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 | |||| | || |||| | ||| || | || || || ||| | ||||| || Sbjct 164744 CTCTCGAAACTACTATCCCGTCATCGAG---GCGCAGAACTCCAACATGCGCCACCGCCC 164688 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 105282 | ||||||||||| ||||||||||| |||| ||||| | ||| | || || Sbjct 164687 CGTCGGTCTCGGTGTCCAGGGTCTCGCCGATGCCTTCATGGCTCTCCGCATGCCCTTCGA 164628 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || ||| |||| | || || ||||| || || |||||||| || Sbjct 164627 ATCTCCCGCCGCTCGCGAACTCAACATCCAGATCTTCGAGACAATCTACCACGCCGCCCT 164568 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCA-TATGAAACCTTTGAGGGTTCTC 105401 |||||| | ||| |||| ||| | | | | | || || || | |||||||| | Sbjct 164567 CGAGGCGTCGTGCGAGATGGCCCAGG-AGCTCGGCAAGTACGAGACATACGAGGGTTCCC 164509 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 | || || || || ||||| || | |||| ||| ||| || | | Sbjct 164508 CCATGTCGCAGGGCAAACTCCAATTCGACCTCTGGGGCCGTGTCCCCACCGATCTTTGGG 164449 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||| | ||| | | ||||||||| | ||| | || ||| || || | | Sbjct 164448 ACTGGTCCACCCTCCGAGCCCAGATCAAGGAGCACGGTGTACGAAACTCCCTTCTTGTCG 164389 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || |||||||| | || || | || || || ||||| || |||| Sbjct 164388 CTCCCATGCCTACCGCCTCCACATCCCAGATTCTAGGCTGGAACGAGTGCTTCGAGCCCT 164329 Query 105582 ACACGACGA 105590 ||||| ||| Sbjct 164328 ACACGTCGA 164320 >seq1 Length=4122216 Score = 163 bits (180), Expect = 3e-35 Identities = 185/245 (76%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 |||||||| |||||| | || | || || || | ||||| || || ||||| ||||| Sbjct 3090171 CTCTTTGACGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTGAAG 3090230 Query 94774 TGGTTTG-ATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| || | || | |||| |||| || ||||| ||| |||| ||||| || Sbjct 3090231 TGGATTACAGACGAGAAGTCCA---CCTTCGCCGAGCGCCTCATCGCCTTTGCCGCCGTC 3090287 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 ||||||||||||||||| || |||||| | | || | |||||||||||||| || ||| Sbjct 3090288 GAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGACTC 3090347 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 94950 ||||| |||||| ||||||||||||||| ||||| ||||| ||||| |||||| || Sbjct 3090348 ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGAC 3090407 Query 94951 TTTGC 94955 ||||| Sbjct 3090408 TTTGC 3090412 >seq7 Length=1170885 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532 ||||| |||||||| |||||| |||| || |||||||| ||||| || | | || Sbjct 1133417 AGACGGGTACCAAATTGACCATTCGGCGACAGCAGATTGATGTTGTTGCTTCCGACGAAG 1133358 Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592 | | || | || || ||| | ||||| |||||||||| |||||||| || Sbjct 1133357 TTCTGGGCGAGACCAACGATAGTGGTAGTCAGAGACGCTTCACCGTGATGGTACGCGGTC 1133298 Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGG 168652 ||||||| ||| | | ||| ||||||||| || ||||| | || |||||| | | Sbjct 1133297 TTCTCTGAGACGTAACCGACCAGCTGCGCCACCTTGATCTCCTTCTGCAGATTCCGCTTG 1133238 Query 168653 AAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCA 168701 || || |||||| || || || || ||||||||||||||| |||| Sbjct 1133237 AAACAACCGTACAAGACTTTCCGCTGACCAGGCTTGAGACCATCGGCCA 1133189 >seq3 Length=1461739 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| || || || || || || ||||||||||| || |||||| |||||| | |||| Sbjct 1187617 TCGCTTTCGCTTGCGTAGAAGGCATCTTCTTCTCGGGCTCCTTCGCCGCTATCTTTTGGT 1187676 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 | |||||||| ||||| ||||| || | |||||||| ||||| ||| || || | Sbjct 1187677 TGAAGAAGCGGGGTCTGATGCCTGGATTGACATTCTCCAATGAGCTCATCAGCCGAGATG 1187736 Query 94934 AGGG 94937 |||| Sbjct 1187737 AGGG 1187740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260420880480