Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 432 4e-116 seq1 123 3e-23 seq3 89.7 6e-13 >seq9 Length=941136 Score = 432 bits (478), Expect = 4e-116 Identities = 939/1390 (68%), Gaps = 34/1390 (2%) Strand=Plus/Plus Query 78546 CGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCAT 78605 |||||| |||||||| |||||| || | ||||||| || |||||||| ||||| Sbjct 164324 CGTGTAGGGCTCGAAGCACTCGTTCCAGCCTAGAATCTGGGATGTGGAGGCGGTAGGCAT 164383 Query 78606 GGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG----- 78660 ||| ||||| || || || || || | ||| ||| |||||||| | | ||| Sbjct 164384 GGGAGCGACAAGAAGGGAGTTTCGTACACCGTGCTCCTTGATCTGGGCTCGGAGGGTGGA 164443 Query 78661 -CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGA 78719 | |||||||| || | | | ||||| | ||| ||| || | |||| || Sbjct 164444 CCAGTCCCAAAGATCGGTGGGGACACGGCCCCAGAGGTCGAATTGGAGTTTGCCCTGCGA 164503 Query 78720 CGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTC 78779 | || || |||| | | |||||||| || ||||| ||| | ||||| ||| | Sbjct 164504 CATGGGGGAACCCTCGTATGTCTCGTACTTGCCGAGCTCCTGGGCCATCTCGCACGACGC 164563 Query 78780 GAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGT 78839 ||||| |||||||| | | ||||||||| ||||||| ||||| || || Sbjct 164564 CTCGAGGGCGGCGTGGTAGATTGTCTCGAAGATCTGGATGTTGAGTTCGCGAGCGGCGGG 164623 Query 78840 CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGC 78899 ||||| | | || ||| ||||||| ||||||| || |||||||| |||| | | Sbjct 164624 AGATTCGAAGGGCATGCGGAGAGCCATGAAGGCATCGGCGAGACCCTGGACACCGAGACC 164683 Query 78900 GATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGT--CGGG-TAAAAGTTCCG 78956 || || ||||||||||||||| || | ||||||| | |||| || |||| || Sbjct 164684 GACGGGGCGGTGGCGCATGTTGGAGTTCTG---CGCCTCGATGACGGGATAGTAGTTTCG 164740 Query 78957 ATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAA 79016 | |||||| ||| || ||| ||||||||| || | ||||| | || ||| Sbjct 164741 AGAGATGACCTGGTCCAAGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTGAA 164800 Query 79017 ATCAAAAT---GATT-TCCTTT--GATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCA 79070 || | | || ||| | || ||||| || ||| || || || || || || Sbjct 164801 GTCGTAGACCCGCTTCTCCATGTCGACGAAAGCGGGGAGGGCGAGGGAGGCAAGATTACA 164860 Query 79071 CACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTT 79130 || || |||||| || ||| |||||| || || || || | || || || || Sbjct 164861 GACAGCAACCTCGTCAGGCGCAGAGTACTCGATAATCTCGGTACAAAGGTTGGAGGATTT 164920 Query 79131 GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTA 79190 || || |||| | | |||||| || |||| |||||||||||| |||| | Sbjct 164921 AATCGTACCGAGATGTTGCTGGTTCGATTTGGCGTTCGCAGCGTCCTTGTAGAGCATGAA 164980 Query 79191 CGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGAC 79250 || || ||||| |||| || ||| | | || ||||| | | | || || Sbjct 164981 GGGACCGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAACCAGAGCTTCTGAGCTTTGAT 165040 Query 79251 AACCTTCTTGTACCGACCCTG--TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCC 79308 ||| | | || ||| | | | |||||| | ||||| | | | ||| |||| Sbjct 165041 GGTCTT-TCGCCCCTTCCCAGCCTTCT-CGTACGACTCGTACAGCGCCTCGAACTTCTCC 165098 Query 79309 CCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG-CACATCAGGTGCCAGTCCTCGTC 79367 | ||||||| || || |||||||| |||||| ||||| ||| |||||| |||| Sbjct 165099 GAGTGAACATCGGCGAGACCGGGGCACTC-TGCGGGACACATGAGGGTCCAGTCACCGTC 165157 Query 79368 CTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCA 79427 | ||| || || |||||||||||| | |||||| ||||| ||| ||||| || Sbjct 165158 CGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAACAGGTCCCGAGC 165217 Query 79428 ACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTG 79487 ||| | ||| || | || |||||| | || ||||| || || | |||||||||||| Sbjct 165218 ACGGACCTCTTCTTTACCGTGGTTCTTCCTCAAGTCGAGGAACTCGAAGATGTCGGCGTG 165277 Query 79488 CCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTA 79547 ||| ||||| || ||||||||||||| |||| |||||| || || |||| ||| || Sbjct 165278 CCAGGGCTCGAGGTAGATGGCGAACGCACCCGGTCGCTTGTTTCCACCTTGGTCGACATA 165337 Query 79548 CCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT 79607 || |||||| || || | ||||||||||| ||||| |||| | | ||||| || Sbjct 165338 TCGCGCCGTGGCGTCAAAGGCGCGGAGCATGGGAACGATACCGTTCGAGTAACCGTTGGT 165397 Query 79608 CCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGA 79667 ||| || | || | || || | ||| | ||||| |||||| || |||| Sbjct 165398 ACCGGCAATATACGAGCCCTTAGCGCGGACGTTGTGGATGTGGAGTCCGATTCCTCCGGC 165457 Query 79668 CCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTC 79727 ||||||||| |||||||| |||||| ||||||||||| ||||| ||||||||||| Sbjct 165458 AGTCTTGGAGATCTGCGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTCAATCGAGTCGTC 165517 Query 79728 CTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 |||||| ||||| ||||||||| ||||| || |||||| ||||||||||||||||| Sbjct 165518 CTTCATGGCGACAAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAG 165577 Query 79788 GGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT----CATCAGATCGTACGTCTCCTTGA 79843 ||| || | ||||| |||||| | | ||| ||| |||| ||| ||||| ||| Sbjct 165578 GGTAGGGGAGGCGTGGGTGAAG----TATCGCTCAGACATGAGATTGTAAGTCTCAATGA 165633 Query 79844 CGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG-C 79902 | | || | | |||||||| ||||| || || ||||||| | || |||||| | Sbjct 165634 CCTTGTCAATGTTGGCACCGTGGATACCGACGGCAACACGCATGATCATGTGCTGGGGAC 165693 Query 79903 GTCTCGCCGA 79912 || ||| ||| Sbjct 165694 GT-TCGACGA 165702 Score = 423 bits (468), Expect = 2e-113 Identities = 931/1378 (68%), Gaps = 32/1378 (2%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || ||||| ||||| || | | || | ||| Sbjct 165691 CCCCAGCACATGATCATGCGTGTTGCCGTCGGTATCCACGGTGCCAACATTGACAAGGTC 165632 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 ||||| ||| | || ||| || | |||||| ||||| | || ||||| ||| Sbjct 165631 ATTGAGACTTACAATCTCATGTCTGAGCGATACTTCACCCACGCCTCCCCTACCCTCTTC 165572 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||||||||| |||||| || ||||| ||| ||||| || || |||||||| ||| Sbjct 165571 AACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTTGTCGCCATGAAGGACGAC 165512 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 |||||||| ||||||||||| |||||| |||||||| ||||||||| |||| Sbjct 165511 TCGATTGAGGGGATCTACGAGACCCTCAAGACCTGCGCGCAGATCTCCAAGACTGCCGGA 165452 Query 19343 GGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATG---GGACG 19399 || ||||| ||||| | || |||| | | || | || || | || | || Sbjct 165451 GGAATCGGACTCCACATCCACAACGTCCGCGCTAAGGG--CTCGTAT-ATTGCCGGTACC 165395 Query 19400 AACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| || ||| ||||||||| || |||||||||| ||| || |||||| | || Sbjct 165394 AACGGT-TACTCGAACGGTATCGTTCCCATGCTCCGCGCCTTTGACGCCACGGCGCGATA 165336 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 ||| |||| || || ||| || ||| |||||||||||||||||||||| ||||| Sbjct 165335 TGTCGACCAAGGTGGAAACAAGCGACCGGGTGCGTTCGCCATCTACCTCGAGCCCTGGCA 165276 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 ||| ||| || | || |||||||| || | |||||| ||| | || ||| | || Sbjct 165275 CGCCGACATCTTCGAGTTCCTCGACTTGAGGAAGAACCACGGTAAAGAAGAGGTCCGTGC 165216 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 ||| ||||| ||| ||| | ||||| | ||||| |||||| || || ||| ||| Sbjct 165215 TCGGGACCTGTTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCGGA 165156 Query 19639 CGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCG 19697 || || ||| ||| ||||| |||||| || ||||| || || |||| || || | Sbjct 165155 CGGTGACTGGACCCTCATGTGTCCCGCA-GAGTGCCCCGGTCTCGCCGATGTTCACTCGG 165097 Query 19698 AGGCGTTCAATGAGTTGTACCGGACTTACG-TAGCCCAGGGCCGGTTCAAGAAGGTGGTC 19756 || |||| | | | ||||| | | |||| | | ||| || | | ||| || Sbjct 165096 AGAAGTTCGAGGCGCTGTACGAGTCGTACGAGAAGGCTGGGAAGGGGCGA-AAGACCATC 165038 Query 19757 CGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 || | | | ||||| | | ||||| | ||| |||||| ||| || | | Sbjct 165037 AAAGCTCAGAAGCTCTGGTTCGCCATCCTCGAGGCTCAGACCGAGACTGGCGGTCCCTTC 164978 Query 19817 ATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAG 19876 ||| |||||||||||| ||||||||||| || || ||| | | |||| |||| || Sbjct 164977 ATGCTCTACAAGGACGCTGCGAACGCCAAATCGAACCAGCAACATCTCGGTACGATTAAA 164918 Query 19877 TCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGT 19936 || |||||||| ||||| || || || ||| || ||| |||||| ||| || ||| Sbjct 164917 TCCTCCAACCTTTGTACCGAGATTATCGAGTACTCTGCGCCTGACGAGGTTGCTGTCTGT 164858 Query 19937 AATCTGGCGTCCCTGTGCCTGCCGACTTTCGT---CAAGG----CCTCCTCCTTCGACTT 19989 ||||| || ||||| ||| || ||||||| || || | | || |||||| Sbjct 164857 AATCTTGCCTCCCTCGCCCTCCCCGCTTTCGTCGACATGGAGAAGCGGGT-CTACGACTT 164799 Query 19990 TGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCG 20049 || | ||||| | || ||||||||| || || | | |||||| ||| Sbjct 164798 CAAGAAGCTCCACGAGATCACAAAGGTCGTCACCAAGAACTTGGACCAGGTCATCTCTCG 164739 Query 20050 GAACTTTTA-CCCG--ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 |||| || |||| | ||| ||||| || || || ||||||||||| || ||| Sbjct 164738 AAACTACTATCCCGTCATCGA---GGCGCAGAACTCCAACATGCGCCACCGCCCCGTCGG 164682 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 |||| |||||||| || ||||| | |||||| ||| || | | ||||| ||| Sbjct 164681 TCTCGGTGTCCAGGGTCTCGCCGATGCCTTCATGGCTCTCCGCATGCCCTTCGAATCTCC 164622 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGA 20226 | || ||||| ||||||| ||||||||| | | |||||||| |||||| || Sbjct 164621 CGCCGCTCGCGAACTCAACATCCAGATCTTCGAGACAATCTACCACGCCGCCCTCGAGGC 164562 Query 20227 ATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286 |||||||| | ||| | ||| |||| ||||||||| | | |||| || ||| ||| Sbjct 164561 GTCGTGCGAGATGGCCCAGGAGCTCGGCAAGTACGAGACATACGAGGGTTCCCCCATGTC 164502 Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTTGGAG 20340 |||| | ||||| ||| | ||||| ||| ||| || | | ||| Sbjct 164501 GCAGGGCAAACTCCAATTCGACCTCTGGGGCCGTGTCCCCACCGATCTTTGGGACTGGTC 164442 Query 20341 CGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCAT 20400 | ||||| | |||||||| ||||| | || ||||| | || ||||| ||||| Sbjct 164441 CACCCTCCGAGCCCAGATCAAGGAGCACGGTGTACGAAACTCCCTTCTTGTCGCTCCCAT 164382 Query 20401 GCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACG 20458 ||| |||||||| || ||||||| | || |||||| |||||||| |||||| Sbjct 164381 GCCTACCGCCTCCACATCCCAGATTCTAGGCTGGAACGAGTGCTTCGAGCCCTACACG 164324 >seq1 Length=4122216 Score = 123 bits (136), Expect = 3e-23 Identities = 217/311 (70%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 59812 CGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGG 59871 |||||| ||| ||||||||||||||| ||||| ||| | || || | | |||||| Sbjct 3090091 CGTTCAGGGAGAATATCCACTCCGAGACCTACTCCCTCCTTATTGACACCTACATCAAGG 3090150 Query 59872 ATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAA 59930 | || | | | || || ||||| || || ||||| ||| | || | Sbjct 3090151 ACCCCGCTCGCCGGACCTACCTCTTTGACGCCATCGACACCATCCCCTGCA-TCAAGAAG 3090209 Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGAG-CATCATTTGCACAACGTCTC 59987 || || || ||||| || ||||||| | | | | || | | || || | || ||| Sbjct 3090210 AAGGCCGACTGGGCGCTGAAGTGGATTACAGACGAGAAGTCCACCTTCGCCGAGCGCCTC 3090269 Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || || ||||| ||| || || ||||||||||| ||||| ||| | || |||||| Sbjct 3090270 ATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGG 3090329 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 ||||| |||||||| |||||||| || || | |||||||||||||| || ||||| || Sbjct 3090330 CTCAAGAAGCGTGGACTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGAT 3090389 Query 60108 GAGGGCCTCCA 60118 ||||| ||||| Sbjct 3090390 GAGGGTCTCCA 3090400 >seq3 Length=1461739 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||| || ||||| ||||| ||||||||||| ||||| ||| ||||| || ||| | Sbjct 1187619 GCTTTCGCTTGCGTAGAAGGCATCTTCTTCTCGGGCTCCTTCGCCGCTATCTTTTGGTTG 1187678 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || || ||||| || ||| |||||||| ||||| || ||| || ||| Sbjct 1187679 AAGAAGCGGGGTCTGATGCCTGGATTGACATTCTCCAATGAGCTCATCAGCCGAGATGAG 1187738 Query 60111 GG 60112 || Sbjct 1187739 GG 1187740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524443458880